Tag Archives: Naturalism

Podcasts

Doug Axe publishes a new peer-reviewed paper on protein folding

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A new podcast from ID the Future is worth listening to.

Participants

  • Jay Richards, Director of Research at the CRSC, (Discovery Institute)
  • Doug Axe, Director of the Biologic Institute

The MP3 file is here.

Topics

  • the new BIO-Complexity peer-reviewed journal
  • new peer-reviewed paper challenges Darwinian account of protein folding
  • proteins are found in every living system
  • a protein is a chain of parts called amino acids
  • there are 20 amino acids used in living systems
  • it’s like a 20-letter alphabet used to make sentences (proteins)
  • if the sequence is just right, it folds up and has a function
  • the information about the functional sequences is in the genome
  • the “protein fold” is the 3D shape that a functional protein takes on
  • the folding problem is good because you can TEST Darwinian mechanisms
  • the problem is simple enough to be tested rigorously in a lab
  • Question: how easy is it to create a sequence that folds?
  • English is a good analogy to the problem of protein folding
  • you have a long string of characters (e.g. – 200 letters)
  • each “letter” can be one of 20 amino acids
  • if you assign the letters randomly, you almost always get gibberish
  • there are tons of possible sequences of different letters
  • it’s like a 200 digit slot machine with each digit having 20 possibilities!
  • the number of sequences that would actually make sense is tiny
  • protein folding is the same
  • Doug’s paper assesses how many “tries” could have been attempted
  • Doug’s paper calculates the total number of possibilities
  • cells have arrived a large number of functional sequences
  • but only a small number of the total possibilities could have been tried
  • this is called the “sampling problem”
  • there isn’t enough time to test all of the possibilities (see previous paper below)
  • how did living systems arrive at the functional sequences so quickly?
  • there are some possible naturalistic scenarios for solving the problem
  • Doug’s new paper shows that none of the naturalistic explanations work
  • the only explanation left is that an intelligence sequenced the amino acids
  • it is identical to the way that I can sequence letters to make this post

A picture is worth a thousand words

Here’s a video clip from the DVD Darwin’s Dilemma showing the process:

If you would like to know more about Darwin’s Dilemma, you can read Brian Auten’s review of Darwin’s Dilemma.

Who are these guys?

I wrote a post before on Doug Axe’s previous publications in the Journal of Molecular Biology, where he researched how many of the possible sequences of amino acids have biological function. His PhD is from Caltech, and his post-doctoral research on proteins was conducted at Cambridge University.

Jay Richards is a Senior Fellow of the Discovery Institute and a Contributing Editor of The American at the American Enterprise Institute. In recent years he has been a Visiting Fellow at the Heritage Foundation, and a Research Fellow and Director of Acton Media at the Acton Institute. His PhD is from Princeton University.

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News

William Dembski discusses irreducible complexity and co-option

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William Dembski explains what the debate on origins is really about.

About the speaker:

Dr. Dembski has taught at Northwestern University, the University of Notre Dame, and the University of Dallas. He has done postdoctoral work in mathematics at MIT, in physics at the University of Chicago, and in computer science at Princeton University. A graduate of the University of Illinois at Chicago where he earned a B.A. in psychology, an M.S. in statistics, and a Ph.D. in philosophy, he also received a doctorate in mathematics from the University of Chicago in 1988 and a master of divinity degree from Princeton Theological Seminary in 1996. He has held National Science Foundation graduate and postdoctoral fellowships.

The lecture:

Part 1:

Part 2:

Part 3:

Summary (snark is in italics)

What is evolution:

  • Is it enough for Christian students to just retain their faith in college?
  • Or should Christian students seek to transform their universities?
  • The word “evolution” refers to a unguided, purposeless, undirected process
  • Living organisms are not designed, they just appear to be designed
  • Therefore, it is an atheistic theory – there is NO ROOM for God
  • Random variations and natural selection can do the creating of life without God
  • Nothing about evolution suggest that God had anything to do with it

The appearance of design:

  • The cell is a nano-engineered information processing system.
  • The cell has engineering, e.g. – signal transduction, message passing, etc.
  • There are molecular machines similar to man-made machines, but less efficient
  • E.g. – the bacterial flagellum which has 40 parts
  • These molecular machines have minimal complexity – all the parts are needed
  • can’t build a molecular machine step-by-step – all the parts must be present and integrated

How does evolution try to explain molecular machines:

  • The standard naturalistic response is “co-option”
  • Each intermediate step has pieces that are used for other purposes
  • I.e. – Subsets of the parts can have different functions
  • For example, a subset of the bacterial flagellum can be used as a syringe
  • The subset, called the Type-3 secretory system, has only 13 parts
  • The problem is that evolutionists don’t show all the steps, and all the functions
  • For this to be a good response, you need a smooth path from 1 part up to 40
  • Each step of the path has to have a working system with a different function
  • But the atheists don’t have the path, or the intermediate functions
  • It’s like arguing that you can walk from Seattle to Tokyo via the Hawaiian islands

Is the bacterial flagellum a cherry-picked example?

  • There are no detailed molecular pathways for any biochemical systems in the cell
  • The atheistic response is to speculate that pathways will be found as science progresses
  • The pathways are unobservable entities, just like the multiverse and the Cambrian precursors

Where does the machinery to create proteins come from?

  • The molecular machines are composed of proteins
  • The proteins are manufactured by copying protein-building instructions from the DNA
  • The instructions are carried to the build site by messenger RNA
  • The build site is called a ribosome
  • The DNA requires proteins to build, so there is a chicken-and-egg problem
  • The problem is that protein transcription systems require everything in place
  • There is no materialistic theory about how to build this step-by-step

So what do the molecular machines tell us about how life began?

  • The problem of the origin of life is the problem of the origin of information
  • What needs to be explained are the functional sequences of parts
  • The sequences are identical to sequences of letters that make sense
  • The atheist has to say that material processes can create the information
  • The problem of finding sequences of amino acids or proteins is a search problem
  • A blind search of the space of possible sequences is not efficient
  • even with lots time, parts and trials, you can’t converge on functional proteins
  • information is required and the only known producer of information is a mind

Bill is one of my favorite people. He’s smarter than practically all of the atheists who dominate the universities. But because he is an outspoken Christian, he never gets the recognition he deserves. He just keeps plugging away on his research. He doesn’t make excuses.

What is intelligent design?

Related DVDs

Illustra also made two other great DVDs on intelligent design. The first two DVDs “Unlocking the Mystery of Life” and “The Privileged Planet” are must-buys, but you can watch them on youtube if you want, for free.

Here are the 2 playlists:

I also recommend Coldwater Media’s “Icons of Evolution”. All three of these are on sale from Amazon.com.

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Podcasts

MUST-HEAR: John Lennox and Paul Davies debate about aliens and the origin of life

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An amazing debate about the origin of life and the cosmic fine-tuning between a Christian and a materialist agnostic. John Lennox is AWESOME in this debate, and he only talks for a tiny part of the debate. He’s very gracious, and focused the discussion on the areas that we care about. Paul Davies is an EXCELLENT scientist and well aware of what Christians believe. This is a great debate, very easy to listen to. Justin, the moderator, does a great job controlling a fantastic discussion.

The MP3 file is here.

Details

What does it take for life to get going in our universe? Is there intelligence in the stars or right under our nose? Renowned astrophysicist Paul Davies chats to Oxford Professor of Mathematics John Lennox.

A popular science author, Davies is also the Chair of the SETI post detection task force. His latest book “The Eerie Silence” which marks SETI’s 50th anniversary examines the likelihood of the universe producing life elsewhere.

John Lennox is a Christian Mathematician and philosopher. He is the author of “God’s Undertaker: has science buried God?” and has debated Richard Dawkins on several occasions.

Davies’ work on the fine tuning of the universe for life has been sympathetic to theism. In this programme Lennox challenges Davies to look to design not just in cosmology but in the cell. They also chat about what the discovery of ET would mean for Christian theology.

Summary

Justin:

  • Is there meaning in the universe?

Paul:

  • We have no evidence for or against intelligent life elsewhere in the universe
  • The vastness of the universe makes me think there is life elsewhere
  • Humans are capable of observing and understanding the universe
  • It seems the universe has the ability to create observers to understand it
  • If one species has this ability, then we should expect others to do it

John:

  • The fact that we can observe the universe and do science has cosmic significance
  • Our rare habitable planet and our ability to do science is suggestive of purpose
  • So science itself points to an extra-terrestrial intelligence: GOD
  • The complexity of life and consciousness itself points away from atheism
  • Monotheism gave birth to science
  • Human minds capable of doing science are not compatible with atheistic materialism

Justin:

  • Why do you say that either we are the only life or there are many different kinds of life?

Paul:

  • There are lots of factors that have to be met to have a site for simple life
  • These are related to the fine-tuning of cosmic constants, e.g. gravitational force
  • But there are also factors that have to be met for originating intelligent life
  • Things like convergence, self-organization, etc.
  • So the cosmic requirements and evolutionary requirements are different
  • Darwinian evolution doesn’t solve the problem of the origin of life
  • 50 years ago, skepticism about alien life existing anywhere was excessive
  • Today, credulity about alien life exiting everywhere is excessive
  • The naturalist is searching for a process that creates life easily

John:

  • Paul agrees that there is no theory for a naturalistic origin of life
  • This is fatal for the idea that life can emerge elsewhere in the universe
  • We have not discovered any law that produces life without an intelligence
  • Consider the method used by SETI used to detect an alien intelligence
  • Why can’t this method be applied to the origin of life on Earth?
  • Why can’t an intelligence created specified complexity (functional information)?
  • Why can’t an intelligence created epigenetics and protein folding?

Paul:

  • Darwinian evolution can add new biological information after life begins

John:

  • Darwinian evolution assumes a mutating replicating life form to act on

Paul:

  • You can’t generate specified complexity by using physical laws
  • You can’t generate specified complexity by chance
  • At this point we are guessing as to how life might have formed

John:

  • Why do we have to rule out an intelligent cause a priori
  • If you can recognize an intelligence in outer space, why not in living systems?

Paul:

  • I don’t mind the word “intelligence”, it’s the word “signal”
  • I oppose the idea that God or aliens manipulated physical stuff to create life
  • It’s an “ugly explanation and very unappealing both theologically and scientifically”
  • I prefer the idea that the universe has processes to self-organize and create complexity
  • When it comes to supernatural meddling by God, “I don’t want that”
  • If I were God, I would create the universe so that I would not have to intervene
  • I think God would be more clever if he did not have to intervene
  • My preferences about what is “clever” determines what scientific conclusions are allowed

John:

  • Humans already have experience with their non-material minds to move atoms (matter)
  • If God is a mind, then there is no reason why he cannot move atoms (matter)

Paul:

  • My mind is physical, so are you saying that God is physical?
  • If God intervenes in the universe, then what is he doing now?

John:

  • There is a distinction between acts of creation and providential upholding the universe
  • God is also speaking to people and drawing humans toward him
  • God is spirit, not material

Paul:

  • How can a non-physical entity cause effects on the physical world?

John:

  • What science reveals that there is information needed for the origin of life
  • Information requires an intelligence to create it, just as with human who write books
  • That’s not God of the gaps – it’s an inference based on what we know today

Paul:

  • We may be able to explain the origin of life later, using matter, law and chance
  • What you’re saying is that God tinkers with the genome
  • If you say that God intervened once, then he intervenes all the time, everywhere!
  • I don’t want a God who tinkers in the genome
  • if God could intervene in the universe that would remove its intelligibility

John:

  • Look at the cover of this book – when I read words, I infer an intelligence
  • There are bad gaps that the progress of science closes
  • There are good gaps that science opens, showing the need for intelligence
  • On the one hand, you say we have no theory of the origin of life
  • On the other hand, you know that an intelligent designer wasn’t involved
  • If we don’t know how life began, why do you rule God out a priori?

Paul:

  • What scientists want to do is to explain the universe without involving God
  • naturalists want to use science to discover only materialist explanations
  • The purpose of SETI is to prove that there is other life in the universe
  • This would then show that there is a naturalistic way of making life
  • I agree that information in living systems is real hard to explain materialistically
  • I believe in the power of emergence
  • We might discover laws that prove that complexity can emerge without intelligence
  • The discovery of alien life would help to show that no intelligence is needed to make life

Justin:

  • What sort of cosmic fine-tuning is needed at the Big Bang for life to occur?

Paul:

  • It’s true that the universe appears extremely fine-tuned for life to exist
  • The typical answer from naturalists is that there is a multiverse
  • But the multiverse “falls far short” of providing a good answer to the fine-tuning
  • It’s irrational to appeal to massive numbers of unseen universes to explain fine-tuning
  • The design and purpose seen in the universe may be due to God or it may be emergent

John:

  • The fine-tuning is real and the multiverse is a desperate attempt to evade the creator
  • Sir Martin Rees (an atheist) says he “prefers” the multiverse to a designer
  • Scientists are not supposed to prefer anything except what is true

Justin:

  • Would the discovery of aliens hurt Christianity, because of the belief in the uniqueness of humans?

Paul:

  • Christians believe that Jesus came to save HUMANS specifically, not animals or aliens
  • If we were to discover intelligent aliens, it would challenge traditional religions
  • What will God do with alien races? Multiple incarnations? Or just preach the gospel to them?

John:

  • We don’t know if the aliens exist, first of all – it’s speculative
  • The Bible teaches that humans bear the image of God
  • We just don’t know whether alien species are also made in God’s image