Tag Archives: Naturalism

Mark D. Linville: does Darwinian evolution make morality rational?

A conflict of worldviews
A conflict of worldviews

Have you ever heard an atheist tell you that naturalistic evolution is an answer to the moral argument? I have. And I found a good reply to this challenge in the book “Contending With Christianity’s Critics“. The chapter that responds to the challenge is authored by Dr. Mark D. Linville. It is only 13 pages long. I have a link to the PDF at the bottom of this post.

First, a bit about the author:

Blog: The Tavern at the End of the World
Current positions:

  • PhD Research Fellow
  • Tutoring Fellow in Philosophy


  • PhD in Philosophy with a minor in South Asian Studies and a specialization in Philosophy of Religion, University of Wisconsin-Madison
  • MA in Philosophy, University of Wisconsin-Madison
  • MA in Philosophy of Religion, Trinity Evangelical Divinity School
  • MA in Theology, Cincinnati Christian Seminary
  • BA in Biblical Studies, Florida Christian College

Here is his thesis of the essay:

Darwin’s account of the origins of human morality is at once elegant, ingenious, and, I shall argue, woefully inadequate. In particular, that account, on its standard interpretation, does not explain morality, but, rather, explains it away . We learn from Darwin not how there could be objective moral facts, but how we could have come to believe—perhaps erroneously—that there are.

Further, the naturalist, who does not believe that there is such a personal being as God, is in principle committed to Darwinism, including a Darwinian account of the basic contours of human moral psychology. I’ll use the term evolutionary naturalism to refer to this combination of naturalism and Darwinism. And so the naturalist is saddled with a view that explains morality away. Whatever reason we have for believing in moral facts is also a reason for thinking naturalism is false. I conclude the essay with a brief account of a theistic conception of morality, and argue that the theist is in a better position to affirm the objectivity of morality.

And here’s a sample to get your attention:

But even if we are assured that a “normal” person will be prompted by the social instincts and that those instincts are typically flanked and reinforced by a set of moral emotions, we still do not have a truly normative account of moral obligation. There is nothing in Darwin’s own account to indicate that the ensuing sense of guilt—a guilty feeling—is indicative of actual moral guilt resulting from the violation of an objective moral law. The revenge taken by one’s own conscience amounts to a sort of second-order propensity to feel a certain way given one’s past relation to conflicting first-order propensities (e.g., the father’s impulse to save his child versus his impulse to save himself). Unless we import normative considerations from some other source, it seems that, whether it is a first or second-order inclination,one’s being prompted by it is more readily understood as a descriptive feature of one’s own psychology than material for a normative assessment of one’s behavior or character. And, assuming that there is anything to this observation, an ascent into even higher levels of propensities (“I feel guilty for not having felt guilty for not being remorseful over not obeying my social instincts…”) introduces nothing of normative import. Suppose you encounter a man who neither feels the pull of social, paternal or familial instincts nor is in the least bit concerned over his apparent lack of conscience. What, from a strictly Darwinian perspective, can one say to him that is of any serious moral import? “You are not moved to action by the impulses that move most of us.” Right. So?

The problem afflicts contemporary construals of an evolutionary account of human morality. Consider Michael Shermer’s explanation for the evolution of a moral sense—the “science of good and evil.” He explains,

By a moral sense, I mean a moral feeling or emotion generated by actions. For example, positive emotions such as righteousness and pride are experienced as the psychological feeling of doing “good.” These moral emotions likely evolved out of behaviors that were reinforced as being good either for the individual or for the group.2

Shermer goes on to compare such moral emotions to other emotions and sensations that are universally experienced, such as hunger and the sexual urge. He then addresses the question of moral motivation.

In this evolutionary theory of morality, asking “Why should we be moral?” is like asking “Why should we be hungry?” or “Why should we be horny?” For that matter, we could ask, “Why should we be jealous?” or “Why should we fall in love?” The answer is that it is as much a part of human nature to be moral as it is to be hungry, horny, jealous, and in love.3

Thus, according to Shermer, given an evolutionary account, such a question is simply a non-starter. Moral motivation is a given as it is wired in as one of our basic drives. Of course, one might point out that Shermer’s “moral emotions” often do need encouragement in a way that, say, “horniness,” does not. More importantly, Shermer apparently fails to notice that if asking “Why should I be moral?” is like asking, “Why should I be horny?” then asserting, “You ought to be moral” is like asserting, “You ought to be horny.” As goes the interrogative, so goes the imperative. But if the latter seems out of place, then, on Shermer’s view, so is the former.

One might thus observe that if morality is anything at all, it is irreducibly normative in nature. But the Darwinian account winds up reducing morality to descriptive features of human psychology. Like the libido, either the moral sense is present and active or it is not. If it is, then we might expect one to behave accordingly. If not, why, then, as a famous blues man once put it, “the boogie woogie just ain’t in me.” And so the resulting “morality” is that in name only.

In light of such considerations, it is tempting to conclude with C. S. Lewis that, if the naturalist remembered his philosophy out of school, he would recognize that any claim to the effect that “I ought” is on a par with “I itch,” in that it is nothing more than a descriptive piece of autobiography with no essential reference to any actual obligations.

When it comes to morality, we are not interested in mere descriptions of behavior. We want to know about prescriptions of behavior, and whether why we should care about following those prescriptions. We are interested in what grounds our sense of moral obligation in reality. What underwrites our sense of moral obligation? If it is just rooted in feelings, then why should we obey our moral sense when obeying it goes against out self-interest? Feelings are subjective things, and doing the right thing in a real objective state of affairs requires more than just feelings. There has to be a real objective state of affairs that makes it rational for us to do the right thing, even when the right thing is against our own self-interest. That’s what morality is – objective moral obligations overriding subjective feelings. I wouldn’t trust someone to be moral if it were just based on their feelings.

The PDF is right here for downloading, with the permission of the author.

Lawrence Krauss debates “A Universe From Nothing” with an astrophysicist

Two horses fight it out, may the best horse win!
Two horses fight it out, may the best horse win!

Dina sent me news of a cracking good episode of Unbelievable, which features Lawrence Krauss, who debated William Lane Craig. Krauss’ book was also reviewed in the New York Times.

The MP3 file is here.


Lawrence Krauss is a Cosmologist at Arizona State University who describes himself as an “anti-theist”. His latest book “A Universe From Nothing” has received both acclaim and criticism for its attempt to answer the question “Why is there something rather than nothing?” Debating the issue with Krauss is Rodney Holder, Course director at the Faraday Institute, Cambridge. An astrophysicist and priest by background. In a lively exchange they debate whether Krauss’ “nothing” is “nothing”, fine tuning and multiverses, scientific knowledge, miracles and the usefulness of theology and philosophy.

This debate is quite entertaining, and do not be intimidated if your don’t understand science. You can understand pretty easily who is arguing based on facts and who is speculating about unobservable, untestable entities. At one point, Krauss actually denies that there is any fine-tuning in the universe, so please see this link to refute that claim as well as this podcast which explains some examples of fine-tuning. Krauss gets a bit angry at the beginning, but calms down.

Quotation marks are for direct quotes, italics is for made-up snark. See below the summary for more posts that are related to this one.

Summary of the discussion: (picked up at 9:30 when they start talking about the book)


  • explain your theory of how the universe can come into being from nothing


  • the nothing that preceded the universe is “no space, no time, no universe”
  • theists say that God is responsible for creating the universe out of this nothing
  • but the laws of nature can create the universe uncaused out of nothing


  • Krauss sometimes writes that the nothing is really a quantum vacuum, but that is not nothing
  • He even acknowledges in his book that a quantum vacuum is not nothing
  • He thinks that the nothing has properties, even though it has no being
  • It has the property of being unstable
  • It has the property of being acted on by quantum fields
  • It has the property of being acted on by gravity


  • But nothing can have the potential to do things inside it
  • For example suppose you have an electron, which is not nothing
  • If it jumps from one level to another, it emits light
  • There was no potential for the light in the electron, but it was there as part of atomic structure


  • But in cases like that, there is something physical that has the potential
  • Well, how did God makes the universe then if it had no potential?


  • God existed, and the potential for creating the universe in himself


  • It was written by a philosopher, so I dismissed it


  • These book reviewers have not even read my book!


  • Science will be able to figure out how to make something from nothing in the future
  • We are even now speculating about interesting questions, like is there a multiverse?


  • Consider the critical review of your book in the New York Times
  • The author of the review claims that you equivocate on the term “nothing”
  • In order to get things to pop into being, you have to make “nothing” mean “something”
  • Reviewer: none of Krauss’ theories explain how something can come from actual nothingness


  • In physics, something and nothing are not that different
  • The reviewer doesn’t understand the physics
  • He doesn’t understand quantum field theory
  • You could call a quantum vacuum “nothing”, (this is the vacuum fluctuation model, refuted by William Lane Craig in a peer-reviewed publication in an astrophysics journal – get the full text of the article here)
  • Maybe there is an eternally existing multiverse that we can’t observe or test scientifically
  • Maybe it has laws that we don’t know about which allow our universe to pop into being
  • Maybe this popping into being is uncaused
  • (alarmed) Who made God? Who made God?


  • God is eternal and necessary


  • (interrupting, angry) What does it mean for something to be necessary?


  • Basically, you have to decide whether there is more evidence that the necessary being God or a multiverse


  • So Dr. Krauss are you willing to say that the universe is a brute fact, in some sense, and requires no explanation


  • (angry) Religious people are stupid because they just assume brute facts, not like me and my unobservable, untestable multiverse
  • (angry) Religious people are against the progress of science, they don’t want to figure out how things work


  • But isn’t it possible that naturalists can be opposed to the progress of science?
  • What about the way the Fred Hoyle opposed the Big Bang because he wanted an eternal universe


  • (angry) But naturalists like me let the facts determine our beliefs, like the facts about the eternal unobservable, untestable multiverse
  • (angry, shouting) Philosophers are stupid, they know nothing!

=== Break ===


  • Do you see any evidence of purpose in the universe?


  • Well maybe I would believe if the stars lined up to spell out a message from God


  • Actually no, that wouldn’t be evidence for God on your multiverse view
  • if there an infinite number of universes existing for an infinite amount of time, then anything can happen no matter how unlikely it is
  • therefore, no evidence could convince you that God exists, since the unobservable, untestable, eternal multiverse can make anything it wants


  • That’s a true statement, and very convenient for atheists who don’t want to be accountable to God, don’t you think?
  • Back to the multiverse, how does it solve the fine-tuning?


  • “We have no idea if the universe is fine-tuned for life”, even though the atheist Martin Rees who endorsed Krauss’ book wrote his own book about the fine-tuning of the universe called “Just Six Numbers”
  • Inflationary theory does suggest a way to create multiple universes, (this is the chaotic inflationary model, refuted by William Lane Craig in a peer-reviewed publication in an astrophysics journal – get the full text of the article here)


  • But this theory is still very much a hypothesis, isn’t it? We can’t observe or test this hypothesis can we?


  • “No, and that is really important to state”
  • “I’m an empiricist, so if you can’t falsify it and if you can’t test it then it’s not science”
  • In my book, I speculate about a way that we could test the multiverse theory


  • Yes, in principle, the multiverse would be scientific if you could test it through other theories like inflationary theory
  • There are a lot of speculations about multiverse theory, but no evidence from predictions that were validated in the lab


  • “I agree completely with everything you just said”


  • Roger Penrose agrees with Holder that the multiverse theory is too speculative
  • (To Holder) Isn’t the multiverse theory better than positing a completely different kind of being, which is God?


  • The multiverse theory is extremely speculative
  • Even if the multiverse were true, you would still need to explain the multiverse


  • People don’t oppose my book because it’s full of self-contradictory speculations
  • People oppose my book because they are stupid and ignorant


  • There are things that exist that science cannot measure, like objective morality
  • It’s possible to give explanations for moral behavior by appealing to evolution
  • But that does not ground self-sacrificial morality, such as what occurs in the Christian life


  • Dawkins says there is no purpose or morality in in the universe, do you agree?


  • “There is certainly no evidence of any of that”


  • In the book, you talk about how we live in a special time in the universe’s history to be able to do science, (i.e. – The Privileged Planet hypothesis)
  • You also write about how all the discoveries were are making will not be communicated to anyone in other places in the universe
  • So what is the meaning of doing science on your view? And why are you sad at the knowledge that will not be available to people in the future?
  • Are you longing for some kind of purpose?


  • No, I just get enjoyment from studying the universe with science to gain understanding


  • What do you make of Einstein’s statement about the unexpected comprehensibility of the universe
  • Theists would say that this is because God wanted us to study and understand and gain knowledge


  • “It is remarkable that the universe is comprehensible”


  • Why is the universe comprehensible?


  • Well, maybe the universe just has to be that way


  • What do you make of the heat death of the universe, when all life in the universe will die out?


  • That’s the way the universe is
=== BREAK ===


  • I wouldn’t want to live in a universe where there was a God
  • God is a cosmic Saddam Hussein
  • “Religious people turn their minds off” and believe in God for consolation


  • First, Jesus is the revelation of God and he is no Saddam Hussein
  • Second, the Christian life is anything but easy, we are facing some persecution already in the UK
  • Third, there is also the problem of being accountable to God when we die
  • It’s very much like science – Christianity is the way it is, not the way we want it to be


  • “If you don’t believe in him, you don’t get any of the benefits, so you have to believe”
  • “And then if you’ve done something wrong, you’re going to be judged for it”
  • “So I don’t want to be judged by God, I want to be… that’s the bottom line”


  • Well, Jesus has died to pay the price for those things we’ve done wrong
  • Although we will have to face the charges for what we’ve done, believers will ultimately be forgiven

Finally, Peter Sean Bradley note that Krauss is now walking back his rhetoric in response to criticisms from people like atheist John Horgan.

Related posts

Mike Licona and Bart Ehrman debate the resurrection of Jesus

Two horses fight it out, may the best horse win!
Two horses fight it out, may the best horse win!

From the Unbelievable radio show.


Bart Ehrman is well known as a US New Testament Scholar who lost his Christian faith and now questions many core precepts of Christianity, including the Resurrection of Jesus.  When Mike Licona had doubts he devoted himself to investigating the evidence and became convinced that Jesus resurrection is the only rational explanation for the facts.

They debate key historical facts about the resurrection – are the letters of Paul that report the resurrection and the Gospel accounts trustworthy or theologised and changed with time?  What about apparent contradictions between the Gospels? Does the consensus of scholars count as evidence, or is there a Christian bias?  Can a miracle count as an explanation for historical data?

The MP3 file is here.

Snarky summary of the radio debate: (items with * are my made-up paraphrases/clarifications)

This has got to be one of my silliest summaries, but Ehrman makes me so annoyed.

– my new book is about forgeries in the ancient world
– some books were falsely attributed to prominent Christian figures
– there are mistakes in the Bible
– there are mistakes in the resurrection narratives
– the defeat of inerrancy led to his conversion to liberal Christianity
– the problem of evil and suffering caused him to become a non-Christian

– there are minimal facts that are agreed to by a broad spectrum of scholars
– the minimal facts are accepted because they pass standard historical criteria
– Fact 1: Jesus died by crucifixion
– Fact 2: Individuals and groups had visions of Jesus after his death
– Fact 3: Paul, a skeptic and an enemy, had an appearance of Jesus that converted him
– these facts are agreed to atheist scholars, liberal scholars, etc.
– virtually 100% of scholars agree with these three facts
– there is no naturalistic explanation of these three facts
– therefore, the best explanation of these three facts is that God raised Jesus from the dead

– all historians would accept these three facts, except for maybe the group appearances
– the death of Jesus is irrelevant to the resurrection
– the second and third point can be collapsed together
– so really there is only one fact

– the crucifixion is relevant because Muslims don’t admit that fact
– the crucifixion important because it establishes a resurrection, not a resuscitation

– well, if the point is that he died, then yes, this does require a resurrection

– the crucifixion refutes Muslims who deny that Jesus died
– the crucifixion refutes the apparent death theory (swoon theory)
– the death is required for a bodily resurrection
– it’s important to know what facts most scholars, regardless of worldview, agree on
– it’s important to emphasize that Licona is working from historical bedrock facts
– the resurrection is the best explanation for the historical bedrock facts

– you are trying to list 3 things, but really it is just one thing – the appearances
– and not ALL scholars agree that the group visions occurred

– name one prominent scholar who denies the group appearances

– the radically leftist atheist nutcase John Dominic Crossan denies the group appearances
* Crossan is so far on the left that I look like a nutcase for even citing him
* Crossan believes in the Secret Gospel of Mark, which is a hoax – but I still cite Crossan
* Crossan believes that the synoptics are LATER than gnostic forged gospels – but I still cite Crossan
* Crossan presupposes atheism, so he cannot admit to miracle stories as a pre-supposition – but I still cite Crossan
* Crossan pre-supposes religious pluralism, so he cannot allow any exclusive claims Christians make – but I still cite Crossan
* Crossan is a good historian, it’s just that he is so far to the left that no one – NO ONE – agrees with his all of crazy theories
* I think it is a good idea to cite historians who pre-suppose atheism and political correctness before they sit down to do history

– let me explain why most scholars accept the individual and group post-mortem appearances
– the best source for the appearances is the early creed recorded by Paul in 1 Cor 15:3-8
– Paul himself had an appearance of Jesus after Jesus’ death
– Paul received this material from a source very soon after the appearances – within 1-3 years
– we know that Paul met with Jesus disciples multiple times prior to writing
– Paul probably received it from Peter and James, who were themselves eyewitnesses

– this early dating presumably rules out legend

– well legends CAN start quickly
– it does show that Paul was an eyewitness
– it does show that Paul was in contact with reliable eyewitnesses

– 1 Corinthians is written around 55 AD, twenty-five years after Jesus died
– it is not implausible that Paul got the creed from the disciples, who were eyewitnesses
– but you don’t need a long time for legends to emerge, so that is a possibility

– only about 3% of people could read and write back them
– instead, people had enormous capacity for memorization
– the Pharisees were particularly good at memorization
– Jews were very serious about passing along traditions accurately
– Paul, a prominent Pharisee, would have been capable of passing on early creeds accurately
– Paul, in 1 Cor 7, shows that he is willing to separate his opinions from authentic tradition
– Paul had an opportunity in 1 Cor 7 to put words into Jesus’ mouth, but he wouldn’t do it

– cultural anthropologists show that things do get changed in some oral cultures
– in these oral cultures, it is assumed that the story teller will change the story
– only in written cultures are they careful to avoid changing the story
– in the New Testament, you can compare the same story in two different gospels, there are differences

– Ehrman is right that the gospel writers pick and choose things from the oral tradition that they want to include in their gospels
– different oral tradition transmission schemes have more or less embellishment
– african tribes embellish more, rabbinic teaching embellishes less
* Jesus’ followers would have viewed him as a rabbi, and been careful about adding to his teachings
– Paul, an eyewitness, probably received the creed in 1 Cor 15 from other eyewitnesses
– Paul speaks about going twice to Jerusalem in Galatians
– he is meeting with Peter and James to check his facts

– when you look at Mark and John, there are lots of differences in the narrative

– I agree that the gospels have differences, but the oral tradition is likely fixed

– but Mark and John have different sayings
– why doesn’t Mark have the same explicit high Christology that John has?

– first, John is trying to weave the oral tradition into a compelling story
– and second, when you look in Mark, the high Christology is there in the Son of Man sayings
– the apocalyptic Son of Man is in Mark, and everywhere in the New Testament

– the “apocalyptic Son of Man” isn’t in John

– what about in John 9 with the man who was born blind

– where is the apocalyptic part?

– the healed man worships Jesus because he is the Son of Man
– that links to the apocalypic passages in the Old Testament

– what about the differences between the gospels?

* well, now is the time for me to set up an inerrantist straw man and then knock it down!
* who was at the empty tomb: one angel or two angels? we don’t know, so the whole Bible is false!
* I used to be an inerrantist, so one minor difference is enough for me to dump the whole Bible
* I’ll kill you, you stupid straw man! I hate you, Moody Bible Institute! You lied to me!

– many of these problems can be solved by realizing that the gospel writers compress time
– the stories don’t have to list ALL the characters in every scene
– you don’t have to force the Bible to meet some sort of wooden chronology
– the main thing is that the events happened, not that the descriptions match word for word across sources

– you can’t infer a miracle from history, David Hume says so
* extraordinary claims require extraordinary evidence, David Hume says so
* no I don’t know what begging the question is, I’m not a philosopher
* no I don’t remember when Bill Craig kicked my ass on this Hume objection in our debate
– the New Testament gospels contradict each other at every point, they are not reliable at all!
* they cannot even agree what Jesus’ name is! There are 1 trillion variants of Jesus’ name!
* “one angel vs two angels” proves that the gospels contradict each other at every point
* my expansive list of FOUR theologically insignificant variants proves that the gospels contradict each other at every point

– um, the gospels agree on the central narrative and disagree on the peripherals
– and they agree on the minimal facts I presented, even if they disagree about the number of angels

* they have to agree on everything and be inerrant! The Moody Straw Man Bible Institute says so!
* I really really really need to have the number of angels be the same, or Jesus didn’t die on the cross

– but you don’t deny any of the three minimal facts I presented (crucifixion, appearances, Paul)

– well, I don’t know if the group appearances occurred – maybe they did
– i think Jesus died on the cross, and I think that people said they saw him alive afterward

– if you deny the minimal facts, then you are outside the majority of scholars

– the majority of scholars who agree to the minimal facts you presented are Christians
* Gerd Ludemann is an atheist Christian
* James Crossley is an atheist Christian
* Hector Avalos is an atheist Christian
* the majority of the atheist scholars are all Christians!

– you really think so?

– you name one non-Christian in the SBL

– (incredulous) um, John Dominic Crossan is an atheist

* all you have to do to be a Christian is claim to be one
* you can even deny the existence of God and the divinity of Christ and still be one, you bigot!

– would Jesus or the apostles recognize a Christian as being someone who doubts God’s existence

– my view is that Jesus and the apostles would not recognize evangelical Christians as Christians
* a non-theist can be a Christian just by claiming to be one, but evangelical Christians are not Christians even if they claim to be Christians
– Christians can’t record accurate history about the resurrection because they are biased

– on your view, if a person is a Christian then he can’t write about the evidence for the resurrection
– so then similarly, you would not allow Jews to write about the historicity of the Holocaust
– because you think that if people have an interest in what they are recording then they can’t be objective
– but you have to consider the evidence we have, taking the biases of the sources into account

– but the only people who believe in the resurrection are Christians!

– well, people can consider the evidence for the resurrection as non-Christians
– and then if they accept it they can become Christians

– what about your bias? you don’t believe in God – doesn’t that pre-supposition affect how you do history?

– well, I presuppose naturalism, so I can’t admit to anything in history that implicates supernatural causes
* no I have never heard of the arguments for the Big Bang, fine-tuning, origin of life, Cambrian explosion, irreducible complexity, limits on mutations creating information, habitability and so on – I never heard about that stuff from my atheist university professors and even if I had I would have been expelled for talking about it because that would make people feel bad about their sinning

– so it’s not bias you are concerned about, it’s that you don’t want history to contradict your untested religion of naturalism?
– why not just do the history without pre-suppositions to gather the minimal facts and then see what the best explanation is?

* well God is out of bounds as an explanation because I could not have got my PhD if I mentioned God
* I really needed my smart atheist professors to like me and give me good grades so God is RIGHT OUT
* ideas like a real God and moral laws and Hell makes my atheist professors uncomfortable and that means low grades for me
* I’m not really interested in butting heads with professors – it’s easier to just agree with them and move on to selling books to the gullible
* My books are much more sensational than Dan Brown books, so please buy lots of them!

– what if the historical evidence is good enough to show that Jesus rose from the dead?

– well I would not call someone rising from the dead a miracle – I would call it weird
* I also think that the Big Bang is “weird” but that doesn’t prove that God created the universe out of nothing
* if it’s a miracle then I’m going to have to not sin, and maybe even go to Hell, and we can’t have that

– well, you accept the three minimal facts
– what if we try all the naturalistic explanations for those three facts and there are problems with all of them?
– what if the resurrection is the best explanation for the three minimal facts?

– but I want to arbitrarily rule God put because I want to pre-suppose naturalism
– there is not historical reason I have to rule put supernatural explanations a priori

– I think you are struggling with the theological implications of a historical conclusion

– well when you do theology, you have to avoid grounding your theology on science or history
– theology has to be completely made up or it’s not good theology

– I think you are letting your dislike of the implications of the resurrection determine your historical conclusions
– you have to use historical methods to gather the minimal facts that every scholar accepts, regardless of worldview
– then you weigh ALL the hypotheses, natural and supernatural, that could account for these minimal facts
– then you choose the hypothesis that best explains the minimal facts

New study: loss of non-coding DNA causes abnormal heart function

Christianity and the progress of science
Christianity and the progress of science

First, let’s see what Darwinian evolutionists predict about junk DNA, before we look at what the experiments show.

Here’s biologist John Timmer to explain the orthodox Darwinian view of DNA from 2007:

Personally, I fall into the “it’s all junk” end of the spectrum. If almost all of these sequences are not conserved by evolution, and we haven’t found a function for any of them yet, it’s hard to see how the “none of it’s junk” view can be maintained. There’s also an absence of support for the intervening view, again because of a lack of evidence for actual utility. The genomes of closely related species have revealed very few genes added from non-coding DNA, and all of the structural RNA we’ve found has very specific sequence requirements. The all-junk view, in contrast, is consistent with current data.

Got that? According to Darwinists, DNA is almost entirely junk – this is what is consistent with the view that creatures have evolved through a process of random mutation and selection. The estimates that I’ve seen from evolutionary biologists range from 95% to 99% junk. Now let’s compare the religion with science, and separate mythology from reality.

Here is an article from Lawrence Berkeley National Laboratory discussing a new peer-reviewed science paper published in the Nature Communications journal. (H/T William)


Researchers have shown that when parts of a genome known as enhancers are missing, the heart works abnormally, a finding that bolsters the importance of DNA segments once considered “junk” because they do not code for specific proteins.

The team, led by scientists at the Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab), examined the role of two heart enhancers in the mouse genome, showing that the loss of either one resulted in symptoms that resemble human cardiomyopathy, a disease in which the heart muscle often becomes enlarged or rigid. In humans, the disease often leads to heart failure.

The findings appear in a study published today in the journal Nature Communications.

And there is actually a helpful summary of how evidence has emerged over the past few years that falsified the Darwinian prediction of “it’s all junk”:

When scientists sequenced the human genome, they discovered that less than 5 percent of our DNA were genes that actually coded for protein sequences. The biological functions of the noncoding portions of the genome were unclear.

Over the past fifteen years, however, there has been a growing appreciation for the importance of these noncoding regions, thanks in large part to the efforts of individual labs and, more recently, large international efforts such as the Encyclopedia of DNA Elements (ENCODE) project.

What became clear from this work is that there are many elements of the genome, including enhancers, that are involved in regulating gene expression, even though they do not encode for proteins directly.

This realization meant that there were vast sections of the genome that needed to be explored and understood. Dickel noted that there are about 20,000 genes in the mouse genome, and in many cases, scientists have a fairly good understanding of what will happen if any one of them is disabled. In contrast, there are 80,000 candidate heart enhancers in the human genome, and it is still unclear how important they are for human development.

“In genetic studies, the way you establish whether a gene is important is you delete it from the genome and see what happens,” said Dickel. “In many cases, there are genes that, if disabled, make it difficult for the organism to survive. For enhancers, it’s less known what the consequences are if they are damaged or missing. To use a car analogy, if we took the battery out of a car, it wouldn’t start. That’s a critical component. A missing or damaged enhancer could be essential like a battery, or more similar to a missing passenger seat in the car. It’s not as nice, but it’s still possible to drive the car.”

Note this new study is just one small example of function in the non-coding region of DNA.

Consider this quotation from John Mattick:

[The vast majority of the mammalian genome is differentially transcribed in precise cell-specific patterns to produce large numbers of intergenic, interlacing, antisense and intronic non-protein-coding RNAs, which show dynamic regulation in embryonal development, tissue differentiation and disease, with even regions superficially described as ‘gene deserts’ expressing specific transcripts in particular cells… Moreover, where tested, these noncoding RNAs usually show evidence of biological function in different developmental and disease contexts, with, by our estimate, hundreds of validated cases already published and many more en route, which is a big enough subset to draw broader conclusions about the likely functionality of the rest.


Dr. John Mattick is the executive director of the Garvan Institute, and lab head at the RNA Biology and Plasticity lab.

When I talk to rank and file atheists, they like to tell me that their atheism is backed by the findings of science. I say, which findings? The origin of the universe? The cosmic fine-tuning? The origin of life? The Cambrian explosion? Molecular machines? Irreducible complexity? Galactic habitability? Stellar habitability? What science backs up your atheism?

So far, the most scientific answer I’ve gotten was the junk DNA. The most common answer is Star Trek and Star Wars.

Philip E. Johnson lectures on science, evolution and religion

Christianity and the progress of science
Christianity and the progress of science

I found this fun lecture by the grandfather of the big-tent intelligent design movement, Berkeley law professor Philip E. Johnson.

I’ll bet you guys have all heard of him, but you’ve never heard him speak, right? Well, I was a young man, I used to listen to Phil’s lectures and his debates with Eugenie Scott quite a bit. This is one of my favorite lectures. Very easy to understand, and boilerplate for anything else in the origins debate. This is a great lecture – funny, engaging and useful. You will definitely listen to this lecture several times if you listen to it once.

The MP3 is here. (91 minutes, 62 megabytes)

The Inherit the Wind stereotype

  • Many people get their understanding of origins by watching movies like “Inherit the Wind” (or reading science fiction)
  • The actual events of the Scopes trial are nothing like what the movie portrays
  • The law forbidding the teaching of evolution was symbolic, not meant to be enforced
  • The actual Scopes trial was a publicity stunt to attract attention to Dayton, TN to bring business to the town
  • The ACLU advertised for a teacher who would be willing to be sued
  • They found a substitute physical education teacher who would be willing to “break” the law
  • The movie is nothing like the actual events that transpired
  • the movie is a morality play
  • The religious people are evil and stupid and ignorant and bigoted
  • The scientists and lawyers are all intelligent, romantic, and honest seekers of the truth
  • The religious people think that the Bible trumps science and science is not as reliable as the Bible
  • The movie argues that the reason why there is ANY dissent to evolution is because of Biblical fundamentalism
  • The movie presents the idea that there are no scientific problems with evolution
  • The movie says that ONLY Biblical fundamentalists who believe in 6 day, 24-hour creation doubt evolution
  • The movie says that Biblical fundamentalism are close-minded, and not open to scientific truth
  • The movie says that people who read the Bible as making factual claims are misinterpreting the Bible
  • The movie says that smart people read the Bible for comfort and feelings and arbitrary values, not for truth

Guided evolution and methodological naturalism

  • What scientists mean by evolution is that fully naturalistic, unguided, materialistic mechanisms caused the diversity of life
  • Scientists do not allow that God had any real objective effect on how life was created
  • Scientists think that nature did all the creating, and any mention of God is unnecessary opinion – God didn’t DO ANYTHING
  • Scientists operate with one overriding rule – you can only explain the physical world with physical and material causes
  • Scientists DO NOT allow that God could have done anything detectable by the sciences
  • Scientists WILL NOT consider the idea that natural, material processes might be INSUFFICIENT for explaining everything in nature
  • You cannot even ask the question about whether natural laws, matter and chance can explain something in nature
  • Intelligent causes can NEVER be the explanation for anything in nature, and you can’t even test experimentally to check that
  • Scientists ASSUME that everything can be explained with natural laws, matter and chance – no questioning of natural causes is allowed
  • Where no natural explanation of a natural phenomenon is available, scientists SPECULATE about undiscovered natural explanations
  • The assumption of naturalistic sufficiency is called “methodological naturalism”
  • To question the assumptions that natural is all there is, and that nature has to do its own creating, makes you an “enemy of science”
  • But Johnson says that naturalists are the enemies of science, because they are like the Biblical fundamentalists
  • Naturalists have a presumption that prevents them from being willing to follow the evidence where it is leading
  • Experiments are not even needed, because the presumption of naturalism overrides any experimental finding that falsifies the sufficiency of natural causes to explain some natural phenomenon

What can natural selection and mutation actually do?

  • what evolution has actually been observed to do is explain changing populations of moths and finches
  • finches with smaller or larger beaks are observed to have differential survival rates when there are droughts or floods
  • no new body plan or new organ type has been observed to emerge from these environmental pressures
  • the only kind of evolution that has been observed is evolution within types – no new genetic instructions are created
  • in textbooks, only confirming examples are presented – but what is required is a broad pattern of gradual development of species
  • if you look at the fossil record, what you see in most cases is variation within types based on changing environments
  • the real question is: can natural law and chance be observed to be doing any creating of body plans and organ types?

What kind of effect requires an intelligent cause?

  • the thing to be explained in the history of life is the functional information sequences
  • you need to have a sequence of symbols or characters that is sufficiently long
  • your long sequence of characters has to be sequenced in the right order to have biological function
  • the only thing that can create long sequences of functional information is an intelligent cause
  • intelligent design people accept micro-evolution – changes within types – because that’s been observed
  • the real thing to be explained is the first living cell’s functional information, and the creation of new functional information

Johnson’s case for intelligent design is rooted in science – specifically in the specific arrangements of components in proteins that allows organisms to perform biological functions.

Critical response

The next 15 minutes of the lecture contain a critical response from a philosophy professor who thinks that there have been no developments in design arguments since Aquinas and Paley. He basically confirms the stereotypes that Johnson outlined in the first part of the lecture. I recommend listening to this to see what opposition to intelligent design really looks like. It’s not concerned with answering scientific questions – they want to talk about God, the Bible and Noah’s ark. It’s our job to get people like this critic to focus on the science.

Here’s my snarky rendition of what he said:

1) Don’t take the Bible literally, even if the genre is literal.

  • all opposition to evolution is based on an ignorant, fundamentalist, literal reading of the Bible
  • the Bible really doesn’t communicate anything about the way the world really is
  • the Bible is just meant to suggest certain opinions and experiences which you may find fetching, or not, depending on your feelings and community
  • if Christians would just interpret the Bible as myths and opinions on par with other personal preferences, then evolution is no threat to religious belief

2) As long as you treat the design argument as divorced from evidence, it’s not very effective

  • the latest and best version of the design argument is the old Paley argument which involves no experimental data, so I’ll critique that
  • this 200-year old argument which doesn’t rely on science has serious problems, and unnamed Christians agree with me!
  • Christians should NOT try to prove God’s existence using evidence from the natural world (as Romans 1 says), and in fact it’s “Pelagianism” to even try
  • Christians should divorce their faith from logic and evidence even though the Bible presents faith as being rooted in reason and evidence
  • Christians should not tie their faith to the science of today, because science is always changing and the theism-friendly evidence of today might be overturned tomorrow
  • It’s a good idea for me to critique the arguments of 1000-year old people who did not know anything about the cosmic fine-tuning argument – that’s fair!
  • I find it very useful to tell people that the argument from design is false without mentioning any design arguments from DNA or cosmic fine-tuning
  • We need to assume that the natural world is explainable using only natural causes before we look at any evidence
  • We should assume that natural causes create all life, and then rule out all experimental evidence for intelligent causes that we have today
  • As long as you accept that God is a personal opinion that has nothing to do with reality, then you can do science
  • The non-Christian process theologian Teilhard de Chardin accepts evolution, and therefore so should you
  • Remember when theists said God caused thunder because he was bowling in the clouds and then we found out he didn’t? Yeah well – maybe tomorrow we’ll find out that functional sequences of amino acids and proteins have natural causes! What would you do then?

3) What the Bible really says is that you should be a political liberal

Q&A time

The lecture concludes with 13 minutes of questions.