Tag Archives: Naturalism

New study: parrots have similar brain mechanisms to humans

A cockatoo uses a little tool he made to reach a snack
A cockatoo uses a little tool he made to reach a snack

OK, it’s a fun Friday post. I guess most of my readers know that I love almost all the birds, and especially parrots. I have owned parrots most of my life, and want to get more, too. I also like to feed the wild birds who come to visit my house. One reason I like them so much is that they are very intelligent and obviously designed by a very clever engineer.

First, let me explain what convergence is, then we’ll look at a recent peer-reviewed scientific publication.

We have to start this Science Daily post with the definition of convergence in biology.

In evolutionary biology, convergent evolution is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches.

It is the opposite of divergent evolution, where related species evolve different traits.

On a molecular level, this can happen due to random mutation unrelated to adaptive changes; see long branch attraction. In cultural evolution, convergent evolution is the development of similar cultural adaptations to similar environmental conditions by different peoples with different ancestral cultures. An example of convergent evolution is the similar nature of the flight/wings of insects, birds, pterosaurs, and bats.

All four serve the same function and are similar in structure, but each evolved independently.

So, naturalists say that if two organisms have traits that are similar, it must mean that the trait evolved once in their ancestors, and then the modern species inherited the trait from those ancestors. If evolution is true, the only mechanism they have to develop traits shared by two organisms is mutation and selection. The problems occur when two organisms share similar traits, but they have no recent common ancestor, and no recent shared evolutionary history of mutation and selection.

Here’s the latest study from the New Scientist:

To learn more how these birds’ brains develop, Mello and his team compared the genome of the blue-fronted Amazon parrot with that of 30 other birds. They found that regions of the parrot genome that regulate when and how genes for brain development are turned on are the same as those found in humans. These so-called ultra-conserved elements evolved in both species at different times, but with similar results.

Well, parrots and humans are completely different creatures, with no recent evolutionary history, and no recent common ancestors. So, if these changes are due to evolution, then we should see them in the very very very distance common ancestor shared by birds and humans. But then shouldn’t they be in all the other animals who descend from that very very very distant common ancestor to?

Watch this:

I’ll tell you what the real explanation is: the real explanation is that God created birds and humans. And, like a clever engineer, he re-used components that produced the behavior he wanted in his birds and his humans. We know how this works, because this is how intelligent agents write code today. Why do we need a naturalistic theory that requires magic to work, when we have a simple explanation that we can  observe every time someone writes a blog post, or some code, or anything with information in it?

Anyway, however you feel about that, try to be kind to birds, as they are much smarter and more sensitive than most people think. Put out some bird feeders in the yard, if you don’t have an outdoor cat. And if you do have a cat, then why not put a bell on it, or keep it indoors?

Related posts

Yale computer science professor David Gelernter expresses doubts about Darwinism

How did life begin?
How did life begin?

I had to learn about David Gelernter when I was doing my Masters in computer science. We studied his book “Mirror Worlds”. A few weeks ago, I blogged about his impressions of the difficulty in forming a simple protein by chance – something that naturalistic mechanisms would have to do in order to avoid intelligent agency as a cause in nature. He found it very unlikely. But there’s more!

Recently, my friend Terrell sent me a video featuring Peter Robinson (who hosts the splendid Uncommon Knowledge show out of Stanford University), and three interesting people. First, there was Dr. Stephen C. Meyer, who is one of my two favorite thinkers. I’ve blogged on his work about the origin of life and the Cambrian explosion here many times. Then, there was Dr. David Berlinski, a secular Jewish professor of mathematics, who has studied origins issues. And then Dr. David Gelernter, who teaches computer science at Yale University, and is a legend in computer science research.

Here’s the video: (H/T Terrell)

Here is an article by Jennifer Kabbany in The College Fix about the video.

She writes about his recent Claremont Review of Books article, as well as the interview above:

In May, the Claremont Review of Books published a column by Gelernter headlined “Giving Up Darwin.” In it, he explained how his readings and discussions of Darwinian evolution and its competing theories, namely intelligent design, have convinced him Darwin had it wrong.

In particular, he cited Stephen Meyer’s 2013 book Darwin’s Doubt as well as The Deniable Darwin by David Berlinski. The professor expanded on his views in an interview with Stanford University’s Hoover Institution that was published last week.

Gelernter stops short of fully embracing intelligent design, both in his essay and during his interview. He said in his interview he sees intelligence in Earth’s design, and has no quarrel with ID proponents, but notes the world a mess, its suffering far outweighs its goodness.

“My argument is with people who dismiss intelligent design without considering, it seems to me — it’s widely dismissed in my world of academia as some sort of theological put up job — it’s an absolutely serious scientific argument,” Gelernter said during his interview. “In fact it’s the first and most obvious and intuitive one that comes to mind. It’s got to be dealt with intellectually.”

I found this part the most interesting, since we are seeing so much intolerance from the secular left, whenever anyone disagrees with their dogma:

Gelernter said he likes many of his colleagues at Yale, that they are his friends, but when he looks at “their intellectual behavior, what they have published — and much more importantly what they tell their students — Darwinism has indeed passed beyond a scientific argument as far as they are concerned. You take your life in your hands to challenge it intellectually. They will destroy you if you challenge it.”

“Now, I haven’t been destroyed, I am not a biologist, and I don’t claim to be an authority on this topic,” Gelernter added, “but what I have seen in their behavior intellectually and at colleges across the West is nothing approaching free speech on this topic. It’s a bitter, fundamental, angry, outraged rejection [of intelligent design], which comes nowhere near scientific or intellectual discussion. I’ve seen that happen again and again.”

Gelernter acknowledges “I am attacking their religion and I don’t blame them for being all head up, it is a big issue for them.”

Dr. Gelernter cited three arguments in his article: the origin of life, and the Cambrian explosion, and genetic entropy. In the first two problems, there is a problem of huge amounts of biological information coming into being . We know that software engineers can write code like that, but there is no Darwinian mechanism for writing that much code and that short of a time period. The third problem shows that Darwinian mechanisms not only don’t produce functional code – they actually break it down.

I’ve covered both of the arguments before on this blog, but if you really want the details, you should pick up the books that convinced Dr. Gelernter: Dr. Stephen C. Meyer’s “Signature in the Cell” and “Darwin’s Doubt”. Each book tackles one of the arguments. For the third problem, a good book is Dr. Michael Behe’s “Darwin Devolves”. Even if you just read something about each book, then you’ll know about the arguments for intelligent causes being the best explanation for the history of life on this planet.

Information Enigma: 21-minute video explains intelligent design

Can random mutation and natural selection create new functional information?
Can random mutation and natural selection create new functional information?

The video is here:

I have read and listened and watched a lot of material on intelligent design, but I have never seen so much value packed into such a short lecture. I really hope you’ll watch this and that it’s helpful to you.

Summary:

  • the big question when discussing the origin of life: where did the information in living systems come from?
  • Until 530 million years ago, the oceans were largely devoid of life
  • In a 10 million year period, many new forms of animal life emerged
  • New biological forms of life require new information
  • the discovery of DNA shows that living systems work because cells have information that allows them to build the components of molecular machines: cell types, proteins, etc.
  • can random mutation and natural selection create new functional information?
  • normally, random mutations tend to degrade the functionality of information, e.g. – randomly changing symbols in an applications code does not usually introduce useful new functions, it usually renders what is there non-functional
  • the majority of possible sequences will NOT have functions, so random mutations will more likely give you non-functional code, rather than functional code
  • example: a bicycle lock  with 4 numbers has many possible sequences for the 4 numbers, and only one of them has unlock functionality, the rest have no functionality
  • if you have lots of time, then you might be able to guess the combination, but if the lock as has 10 billion numbers, and only one combination that unlocks, you can spend your whole life trying to unlock it and won’t succeed
  • how likely is it to arrive at a functional protein or gene by chance? Is it more like the 4-dial lock (can be done with lots of time) or the 10 billion dial lock (amount of time required exceeds the time available)?
  • the probability is LOW because there is only one sequence of numbers that has unlock function
  • consider a short protein of 150 amino acids has 10 to the 195th power possible sequences
  • if many of these sequences of amino acides had biological function, then it might be easier to get to one by random mutation and selection than it is with a lock that only unlocks for ONE sequence
  • how many of the possible sequences have biological function?
  • Thanks to research done by Douglas Axe, we now know that the number of functional amino acid sequences for even a short protein is incredibly small…
  • Axe found that the odds of getting a functional sequence of amino acids that will fold and have biological function is 1 in 10 to the 77th power
  • Is that number too improbable to reach by chance? well, there are 10 to 65th atoms in the entire Milky Way galaxy… so yes, this is a very improbable outcome
  • can random genetic mutations search through all the sequences in order to find the one in 10 to the 77th power one that has biological function? It depends on how much guessers we have and how many guesses we get in the time available
  • even with the entire 3.5 billion year history of life on Earth, only about 10 to the 40th organisms have ever lived, which far smaller fraction of the 10 to the 77th total sequences
  • even with a very fast mutation rate, you would not be able to reach a functional protein even with all that time, and even with all those organisms

I was once having a discussion with a woman about the research that Axe did at the Cambridge University lab. He published four articles in the Journal of Molecular Biology. I held out one of the papers to her and showed her the numbers. She said over and over “I hate the Discovery Institute! I hate the Discovery Institute!” Well, yeah, but you can’t make the Journal of Molecular Biology go away with hating the Discovery Institute. JMB is peer-reviewed, and this was experimental evidence – not a theory, not a hypothesis.

We have been blessed by the Creator and Designer of the universe in this time and place with overwhelming evidence – an abundance of riches. For those who have an open mind, this is what you’ve been waiting for to make your decision. For the naturalists who struggle so mightily to block out the progress of experimental science, they’ll need to shout louder and shut their eyes tighter and push harder to block their ears. Maybe if they keep screaming “Star Trek” and “Star Wars” over and over to themselves, they will be able to ignore the real science a little longer.

William Lane Craig debates Austin Dacey: Does God Exist?

Two tough rams butt heads, and may the best ram win!
Two tough rams butt heads, and may the best ram win!

Here is the video and summary of a debate between Christian theist William Lane Craig and Austin Dacey at Purdue University in 2004 about the existence of God.

The debaters:

The video: (2 hours)

The video shows the speakers and powerpoint slides of their arguments. Austin Dacey is one of the top atheist debaters, and I would put him second to Peter Millican alone, with Walter Sinnott-Armstrong in third place. This is the debate to show people who are new to apologetics. The debate with Peter Millican is better for advanced students, and that’s no surprise since he teaches at Oxford University and is familiar with all of Dr. Craig’s work. The Craig-Dacey debate is the one that I give to my co-workers.

By the way, you can get the DVDs and CDs for the first Craig-Dacey debate and the second Craig-Dacey debate and the second Craig-Sinnott-Armstrong debate. The Peter Millican debate is not available on DVD, but the link above (Peter Millican) has the video and my summary.

Dr. Dacey’s 5 arguments below are all good arguments that you find in the academic literature. He is also an effective and engaging speaker, This is a great debate to watch!

SUMMARY of the opening speeches:

Dr. Craig’s opening statement:

Dr. Craig will present six reasons why God exists:

  1. (Contingency argument) God is the best explanation of why something exists rather than nothing
  2. (Cosmological argument)  God’s existence is implied by the origin of the universe
  3. (Fine-tuning argument) The fine-tuning of the universe for intelligent life points to a designer of the cosmos
  4. (Moral argument) God is the best explanation for the existence of objective moral values and objective moral duties
  5. (Miracles argument) The historical facts surrounding the life, death and resurrection of Jesus
  6. (Religious experience) God’s existence is directly knowable even apart from arguments

Dr. Dacey’s opening argument:

There are two ways to disprove God’s existence, by showing that the concept of God is self-contradictory, or by showing that certain facts about ourselves and the world are incompatible with what we would expect to be true if God did exist. Dr. Dacey will focus on the second kind of argument.

  1. The hiddenness of God
  2. The success of science in explaining nature without needing a supernatural agency
  3. The dependence of mind on physical processes in the brain
  4. Naturalistic evolution
  5. The existence of gratuitous / pointless evil and suffering

One final point:

One thing that I have to point out is that Dr. Dacey quotes Brian Greene during the debate to counter Dr. Craig’s cosmological argument. Dr. Craig could not respond because he can’t see the context of the quote. However, Dr. Craig had a rematch with Dr. Dacey where was able to read the context of the quote and defuse Dr. Dacey’s objection. This is what he wrote in his August 2005 newsletter after the re-match:

The following week, I was off an another three-day trip, this time to California State University at Fresno. As part of a week of campus outreach the Veritas Forum scheduled a debate on the existence of God between me and Austin Dacey, whom I had debated last spring at Purdue University. In preparation for the rematch I adopted two strategies: (1) Since Dacey had come to the Purdue debate with prepared speeches, I decided to throw him for a loop by offering a different set of arguments for God, so that his canned objections wouldn’t apply. I chose to focus on the cosmological argument, giving four separate arguments for the beginning of the universe, and on the evidence for Jesus’ resurrection. (2) I reviewed our previous debate carefully, preparing critiques of his five atheistic arguments. In the process I found that he had seriously misunderstood or misrepresented a statement by a scientist on the Big Bang; so I brought along the book itself in case Dacey quoted this source again. I figured he might change his arguments just as I was doing; but I wanted to be ready in case he used his old arguments again.

[…]The auditorium was packed that night for the debate, and I later learned that there were overflow rooms, too. To my surprise Dr. Dacey gave the very same case he had presented at Purdue; so he really got clobbered on those arguments. Because he wasn’t prepared for my new arguments, he didn’t even respond to two of my arguments for the beginning of the universe, though he did a credible job responding to the others. I was pleased when he attacked the Big Bang by quoting the same scientist as before, because I then held up the book, specified the page number, and proceeded to quote the context to show what the scientist really meant.

Dr. Craig is always prepared!

Cosmologist Luke Barnes answers 11 objections to the fine-tuning argument

Christianity and the progress of science
Christianity and the progress of science

This is from the blog Common Sense Atheism.

Atheist Luke Muehlhauser interviews well-respect cosmologist Luke Barnes about the fine-tuning argument, and the naturalistic response to it.

Luke M. did a good job explaining the outline of the podcast.

Details:

In one of my funniest and most useful episodes yet, I interview astronomer Luke Barnes about the plausibility of 11 responses to the fine-tuning of the universe. Frankly, once you listen to this episode you will be better equipped to discuss fine-tuning than 90% of the people who discuss it on the internet. This episode will help clarify the thinking of anyone – including and perhaps especially professional philosophers – about the fine-tuning of the universe.

The 11 responses to fine-tuning we discuss are:

  1. “It’s just a coincidence.”
  2. “We’ve only observed one universe, and it’s got life. So as far as we know, the probability that a universe will support life is one out of one!”
  3. “However the universe was configured, evolution would have eventually found a way.”
  4. “There could be other forms of life.”
  5. “It’s impossible for life to observe a universe not fine-tuned for life.”
  6. “Maybe there are deeper laws; the universe must be this way, even though it looks like it could be other ways.”
  7. “Maybe there are bajillions of universes, and we happen to be in one of the few that supports life.”
  8. “Maybe a physics student in another universe created our universe in an attempt to design a universe that would evolve intelligent life.”
  9. “This universe with intelligent life is just as unlikely as any other universe, so what’s the big deal?”
  10. “The universe doesn’t look like it was designed for life, but rather for empty space or maybe black holes.”
  11. “Fine-tuning shows there must be an intelligent designer beyond physical reality that tuned the universe so it would produce intelligent life.”

Download CPBD episode 040 with Luke Barnes. Total time is 1:16:31.

There is a very good explanation of some of the cases of fine-tuning that I talk about most on this blog – the force of gravity, the strong force, etc. as well as many other examples. Dr. Barnes is an expert, but he is also very very easy to listen to even when talking about difficult issues. Luke M. is very likeable as the interviewer.