Tag Archives: Darwinism

New study: parrots have similar brain mechanisms to humans

A cockatoo uses a little tool he made to reach a snack
A cockatoo uses a little tool he made to reach a snack

OK, it’s a fun Friday post. I guess most of my readers know that I love almost all the birds, and especially parrots. I have owned parrots most of my life, and want to get more, too. I also like to feed the wild birds who come to visit my house. One reason I like them so much is that they are very intelligent and obviously designed by a very clever engineer.

First, let me explain what convergence is, then we’ll look at a recent peer-reviewed scientific publication.

We have to start this Science Daily post with the definition of convergence in biology.

In evolutionary biology, convergent evolution is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches.

It is the opposite of divergent evolution, where related species evolve different traits.

On a molecular level, this can happen due to random mutation unrelated to adaptive changes; see long branch attraction. In cultural evolution, convergent evolution is the development of similar cultural adaptations to similar environmental conditions by different peoples with different ancestral cultures. An example of convergent evolution is the similar nature of the flight/wings of insects, birds, pterosaurs, and bats.

All four serve the same function and are similar in structure, but each evolved independently.

So, naturalists say that if two organisms have traits that are similar, it must mean that the trait evolved once in their ancestors, and then the modern species inherited the trait from those ancestors. If evolution is true, the only mechanism they have to develop traits shared by two organisms is mutation and selection. The problems occur when two organisms share similar traits, but they have no recent common ancestor, and no recent shared evolutionary history of mutation and selection.

Here’s the latest study from the New Scientist:

To learn more how these birds’ brains develop, Mello and his team compared the genome of the blue-fronted Amazon parrot with that of 30 other birds. They found that regions of the parrot genome that regulate when and how genes for brain development are turned on are the same as those found in humans. These so-called ultra-conserved elements evolved in both species at different times, but with similar results.

Well, parrots and humans are completely different creatures, with no recent evolutionary history, and no recent common ancestors. So, if these changes are due to evolution, then we should see them in the very very very distance common ancestor shared by birds and humans. But then shouldn’t they be in all the other animals who descend from that very very very distant common ancestor to?

Watch this:

I’ll tell you what the real explanation is: the real explanation is that God created birds and humans. And, like a clever engineer, he re-used components that produced the behavior he wanted in his birds and his humans. We know how this works, because this is how intelligent agents write code today. Why do we need a naturalistic theory that requires magic to work, when we have a simple explanation that we can  observe every time someone writes a blog post, or some code, or anything with information in it?

Anyway, however you feel about that, try to be kind to birds, as they are much smarter and more sensitive than most people think. Put out some bird feeders in the yard, if you don’t have an outdoor cat. And if you do have a cat, then why not put a bell on it, or keep it indoors?

Related posts

Are the Galapagos finch beaks evidence of Darwinian evolution?

I have a key that will unlock a puzzling mystery
I have a key that will unlock a puzzling mystery

Jonathan Wells has an article about it at Evolution News.

It says:

When Charles Darwin visited the Galápagos Islands in 1835, he collected specimens of the local wildlife. These included some finches that he threw into bags, many of them mislabeled. Although the Galápagos finches had little impact on Darwin’s thinking (he doesn’t even mention them in The Origin of Species), biologists who studied them a century later called them “Darwin’s finches” and invented the myth that Darwin had correlated differences in the finches’ beaks with different food sources (he hadn’t). According to the myth, Darwin was inspired by the finches to formulate his theory of evolution, thoughaccording to historian of science Frank Sulloway “nothing could be further from the truth.”

In the 1970s, biologists studied a population of medium ground finches on one of the islands in great detail. When a severe drought left only large, hard-to-crack seeds, 85 percent of the birds perished. The survivors had beaks that were about 5 percent larger than the average beak size in the original population. The biologists estimated that if similar droughts occurred once every ten years, the population could become a new species in only 200 years. In a 1999 booklet defending evolution, the U.S. National Academy of Sciences called the finches “a particularly compelling example” of the origin of species.

But after the drought, birds with smaller beaks flourished again, and the average beak size of the population returned to normal. No net evolution had occurred. No matter; Darwin’s finches became an icon of evolution that is still featured in most biology textbooks.

In the 1980s, a population of large ground finches, with larger beaks than the medium ground finches, migrated to the island. When a drought in 2004-2005 again reduced the food supply, the medium and large ground finch populations both declined. But since even the largest beaks among the medium ground finches were no match for the beaks of the large ground finches, the latter pretty much monopolized the larger seeds and the former had to make do with smaller seeds. This time, the medium ground finches that survived the drought had beaks that were smaller than the average size in the original population. Biologists studying the finches argued that birds with smaller beaks were better able to eat the tiny seeds that were left after the large ground finches ate the big ones, and they concluded that this was again an example of “evolutionary change.”

[…]Wait a minute. Average beak size increased slightly during one drought, only to return to normal after the rains return. Then average beak size decreased slightly during another drought. A region of DNA is correlated with beak size. And somehow that tells us how finches evolved in the first place?

There is an important distinction to make between micro-evolution and macro-evolution. Changes within a type is micro-evolution. Evolving a new organ type or body plan is macro-evolution. There is plenty of evidence for micro-evolution, but no evidence for macro-evolution.

What needs to be proven by the Darwinists is that the same process that results in different average beak size in a population of finches after a drought can create the finches in the first place. I think that Darwinists are credulous – they believe what they want to believe because they want to believe it, even if the evidence is incredibly weak. Darwinists must demonstrate that heritable variations can result in the generation of new organ types and body plans. Changes in average beak size is not interesting. What is needed is to show how the beaks, much less the wings, evolved in the first place.

Icons of Evolution

Jonathan has actually written about a number of  misleading things that you may mind in Biology textbooks.

Here are the sections in his book “Icons of Evolution“:

  • The Miller-Urey Experiment
  • Darwin’s Tree of Life
  • Homology in Vertebrate Limbs
  • Haeckel’s Embroys
  • Archaeopteryx–The Missing Link
  • Peppered Moths
  • Darwin’s Finches
  • Four-Winged Fruit Flies
  • Fossil Horses and Directed Evolution
  • From Ape to Human: The Ultimate Icon

Dr. Wells holds a Ph.D in Molecular and Cell Biology from the University of California at Berkeley.

Did your science textbook teach that embryo drawings prove evolution?

Haeckel's embryos and scientific fraud
Haeckel’s embryos and scientific fraud

Jonathan Wells, a biologist with Ph.Ds from Yale and UC Berkeley, writes about one example of fake evidence here:

Charles Darwin thought that “by far the strongest” evidence that humans and fish are descended from a common ancestor was the striking similarity of their early embryos. According to Darwin, the fact that “the embryos of the most distinct species belonging to the same class are closely similar, but become, when fully developed, widely dissimilar… reveals community of descent.” 2 To illustrate this, German Darwinist Ernst Haeckel made some drawings in the 1860s to show that the embryos of vertebrates (fish, amphibians, reptiles, birds and mammals) look almost identical in their earliest stages.

But Haeckel faked his drawings. Not only do they distort vertebrate embryos by making them appear more similar than they really are (in a way that Stephen Jay Gould wrote “can only be called fraudulent” 3), but they also omit classes and stages that do not fit Darwin’s theory. Most significantly, Haeckel omitted the earliest stages, in which vertebrate embryos are strikingly different from each other. The stage he portrayed as the first is actually midway through development. Yet according to Darwin’s logic, early dis-similarities do not provide evidence for common ancestry.

Haeckel used his faked drawings to support not only Darwinian evolution, but also his own “Biogenetic Law,” which stated that embryos pass through the adult stages of their ancestors in the process of development.

…Haeckel’s drawings were exposed as fakes by his own contemporaries, and his Biogenetic Law was thoroughly discredited by 20th century biologists. It is now generally acknowledged that early embryos never resemble the adults of their supposed ancestors. A modern version of recapitulation claims that early embryos resemble the embryos of their ancestors, but since fossil embryos are extremely rare, this claim is little more than speculation based on the assumption that Darwin’s theory is true.

Now the standard response from Darwinists: no textbooks are still using the fraudulent embryo images.

You can see the actual faked pictures from the modern textbooks here. These textbooks were being produced as late as 2004, even though the fraud was detected in the 1800s! Is this the vaunted self-correction of science, or science being twisted to support social and political goals?

And this excerpt from that article is interesting:

Some Darwinists continue to deny that there has been any misuse of Haeckel in recent times. If that is the case, why did Stephen Jay Gould attack how textbooks use Haeckel in 2000? Gould wrote: “We should… not be surprised that Haeckel’s drawings entered nineteenth-century textbooks. But we do, I think, have the right to be both astonished and ashamed by the century of mindless recycling that has led to the persistence of these drawings in a large number, if not a majority, of modern textbooks!” (emphasis added) Similarly, in 1997, the leading embryologist Michael K. Richardson lamented in the journal Anatomy and Embyology that “Another point to emerge from this study is the considerable inaccuracy of Haeckel’s famous figures. These drawings are still widely reproduced in textbooks and review articles, and continue to exert a significant influence on the development of ideas in this field.” (emphases added)

Here is a link to the peer-reviewed journal Science, where there is an article talking about the fraudulent embryo drawings. Yes – the drawings really are fraudulent.

And finally, Casey Luskin has a new post up at Evolution News that lists all the textbooks that contain the fraudulent drawings. One is dated 2013! The drawings just keep getting recycled over and over as a “proof” of evolution.

Michael Behe and Keith Fox debate theistic evolution vs intelligent design

Two tough rams butt heads, and may the best ram win!
Two tough rams butt heads, and may the best ram win!

Michael Behe and Keith Fox debate evolution and intelligent design. (See below for link to video)

Details:

Michael Behe is professor of biochemistry at Lehigh University, Pennsylvania and the founder of the modern Intelligent Design movement. His book “Darwin’s Black Box” ignited the controversy 14 years ago when it claimed that certain molecular machines and biological processes are “irreducibly complex” and cannot be explained by Darwinian evolution.

Keith Fox is Professor of biochemistry at the University of Southampton and chairman of Christians in Science. As a theistic evolutionist he believes that Evolution is the best explanation going for the complexity we see and that ID is a blind scientific alley and theologically unappealing to boot.

They debate whether micromachines in the cell such as the “bacterial flagellum” could have evolved by a Darwinian process of evolution. When inference to design is and isn’t acceptable in science. Whether random mutation can mathematically stack up to complex life, and whether God is reduced to a divine “tinkerer” by ID.

Here’s the debate:

Summary

Note: the following debate summary is rated “S” for Snarky. Reader discretion is advised.

Michael Behe:

  • ID is not Biblical creationism
  • ID is not religion
  • ID is a scientific research program
  • People refuse to discuss ID because of personal philosophical assumptions
  • ID is like the Big Bang – it is based on evidence, but it has broad religious implications

Keith Fox:

  • ID is not Biblical creationism, but it isn’t science

Michael Behe:

  • ID is compatible with common descent
  • ID is only opposed to unplanned, unguided evolution (Darwinism)
  • ID is not necessarily opposed to long periods of time

Behe’s first book – the bacterial flagellum

Keith Fox:

  • Here are a couple of papers that show how parts of the flagellum evolved
  • They are possible pathways

Michael Behe

  • No, those are studies that show that there are similarities between bacterial flagella in multiple organisms
  • Similarities of proteins between different organisms do not necessarily imply a developmental pathway
  • The problem of having the instructions to BUILD the flagellum still remains

Keith Fox:

  • Maybe parts of the flagellum had other functions before they were used in the flagellum
  • Maybe you can use the parts of the flagellum for other purposes
  • Maybe, one can imagine, it’s possible that!

Michael Behe:

  • No, parts have to be modified and re-purposed in order to be used for other functions

Keith Fox:

  • But maybe the proteins can be used in other systems for other things
  • I re-purpose parts from of designed things to other purposes in my house when I do maintenance

Michael Behe

  • Uh, yeah – but aren’t you an intelligent designer? What does your home maintenance have to do with Darwinian evolution?

Is ID another God-of-the-gaps argument?

Michael Behe:

  • Well consider the Big Bang… there was a build-up of scientific evidence for that theory
  • Just because a theory has religious implications, doesn’t mean that it isn’t true
  • You really have to look at the specific evidence for a theory, and not decide in advance

Keith Fox: (I’m paraphrasing/inventing/mocking from now on)

  • But the Big Bang is based on discoveries, and intelligent design is based on gaps in our scientific knowledge
  • What if I did have evidence of a step by step pathway (which I don’t right now)? Then I would win the argument – what would you do then?

Michael Behe:

  • Well, if tomorrow you do manage to find expiremental evidence of a pathway, which you don’t have today, then I would be wrong
  • ID is falsifiable by experimental evidence
  • But what about your your view? Is that falsifiable by experimental evidence?
  • What if someone goes into a lab (someone like Scott Minnich?) and performs gene knockout experiments, and publishes the results
  • You knock out a gene from the bacterial flagellum, you wait for a large number of generations, and it never develops the missing gene
  • You repeat this with every one of the 50 genes in the bacterial flagellum and it never recovers for any of the 50 genes
  • There is no pathway to build up even one of the 50 genes – according to actual experiments
  • What do Darwinists do with experimental evidence that falsifies Darwinism?

Keith Fox:

  • No, I would not accept that experimental evidence could falsify Darwinism
  • Just because known published experimental evidence that we have today falsifies Darwinism, it doesn’t mean Darwinism is false because it’s not falsifiable
  • We don’t know how Darwinism even works – it happened so long ago, and it’s not repeatable or testable, so how could lab ,experiments falsify it?
  • Darwinism is science and intelligent design is faith, though

Which side has the experimental evidence?

Michael Behe:

  • Consider the largest longest-running lab experiment of evolution, Richard Lenski’s experiments on e. coli
  • Lenski has presided over 50,000 generations, (millions of years of evolution)
  • The bacterium did evolve and they did get better but not by evolving features, but by disabling features

Keith Fox:

  • But those are just LAB EXPERIMENTS! What do lab experiments prove?
  • What if? What if? What if? You don’t know, it happened so long ago, and you weren’t there! You weren’t there!
  • (clutches Flying Spaghetti Monster idol tighter and sobs pitifully)

Michael Behe:

  • See, the thing is that I have actual experiements, and here’s some more evidence that just got published last week
  • So I’ve got evidence and then some more evidence and them some other evidence – experimental evidence
  • And all the evidence shows that adaptation is done losing traits not by gaining traits
  • And the published observations are what we see in nature as well

Keith Fox:

  • But doesn’t Darwinism explain some things that we observe?

Michael Behe:

  • Well, I am not saying that micro-evolution doesn’t explain some things – it explains bacterial resistance, and other micro-evolution
  • it just doesn’t explain macro-evolution, and that’s what the experiments show

Keith Fox:

  • But ID is a science stopper! It stops science! You can’t produce experimental evidence to falsify Darwinism – that would stop science!

Michael Behe:

  • Well, you have to understand that the Big Bang postulated a non-material cause to the entire physical universe and yet the experimental evidence was allowed to stand because it was testable and verifiable evidence, even if the theory does have religious implications
  • All explanations in science are design to settle a question and it stops rival explanations that are not as good at explaining the observations
  • Finding the best explanation stops further study because it is better than rival explanations

Keith Fox:

  • Well you have to come up with a materialist explanation because that’s the only kind that a functional atheist like me will allow

Michael Behe:

  • Well, what if the best explanation for an observed effect in nature is non-material, as with the Big Bang?

Keith Fox:

  • But I have to have a material explanation because I am a functional atheist! (i.e. – a theistic evolutionist = functional atheist)

Michael Behe:

  • Well what about the cosmic fine-tuning argument? Do you accept that?
  • That’s an inference to design based on the latest scientific discoveries

Keith Fox:

  • Well I do accept that argument, but I don’t accept design in biology
  • When you apply it to biology, somehow it’s bad and you can’t do that or you losing research money and get fired
  • Anyway, your argument is based on a gap in our current knowledge

Michael Behe:

  • No, back in Darwin’s time we had a gap in our knowledge – we didn’t know what the cell was – we thought it was jello
  • Now, we know what the cell is really like, it’s irreducibly complex, and you can’t build up those molecular machines in a step-wise manner
  • The inference to design is based on the progress of science revealing the increasing levels of complexity
  • In experiments, Darwinian mechanisms cannot build anything useful, instead genes are disabled or dropped
  • You guys don’t have the evidence to prove your view that naturalistic mechanisms can do the creating
  • You keep issuing promissory notes

Keith Fox:

  • Well, you’re just seeing design subjectively, because you are a non-scientist
  • I’m being objective when I tell you that we will discover a materialist explanation later on – really really soon now, maybe even tomorrow, yeah
  • You won’t accept my speculations and you insist on these published experiments
  • You’re subjective and I’m objective
  • Just give me more research money so I can hide the decline better

Michael Behe:

  • Uh, you’re the one who is subjective – I cited evidence, and you are the one who is speculating
  • You have arguments from credulity, and I’ve got the lab experiments
  • You refuse to be skeptical, I am the one who is being skeptical

Keith Fox:

  • Maybe, maybe, maybe! Maybe tomorrow! Maybe in a parallel universe! Maybe aliens from Planet 9 from Outer Space!
  • Who knows! I certainly don’t know! And that somehow means you don’t know either! See?

Michael Behe:

  • Well, to prove me wrong, go into the lab, and run experiments and evolve some new genes (using Darwinian mechanisms) that have new useful functionality

Are there limits to what evolution can do?

Michael Behe:

  • You need multiple changes in the genome to get a new helpful feature (let’s say two specific mutations)
  • One specific change is possible
  • the odds are against getting multiple beneficial changes are really really small – you need two SPECIFIC changes to occur in order

Keith Fox:

  • Well, lots of things are really unlikely – any permutation of dice rolls is as unlikely as any other

Michael Behe:

  • Well, we are talking about TWO SPECIFIC mutations that are needed to get a beneficial function – lots of other mutations are possible, but we are looking for a specific outcome that requires two SPECIFIC mutations out of the whole genome
  • You aren’t going to get useful outcomes unless you direct the mutations

Keith Fox:

  • But then why does God allow evil!!!!1!1!!one!!!

Stephen C. Meyer lectures on intelligent design and the origin of life

Christianity and the progress of science
Christianity and the progress of science

A MUST-SEE lecture based on Dr. Stephen C. Meyer’s book “Signature in the Cell“.

I highly recommend watching the lecture, and looking at the slides. The quality of the video and the content is first class. There is some Q&A (9 minutes) at the end of the lecture.

Topics:

  • intelligent design is concerned with measuring the information-creating capabilities of natural forces like mutation and selection
  • Darwinists think that random mutations and natural selection can explain the origin and diversification of living systems
  • Darwinian mechanisms are capable of explaining small-scale adaptive changes within types of organisms
  • but there is skepticism, even among naturalists, that Darwinian mechanisms can explain the origin of animal designs
  • even if you concede that Darwinism can account for all of the basic animal body plans, there is still the problem of life’s origin
  • can Darwinian mechanisms explain the origin of the first life? Is there a good naturalistic hypothesis to explain it?
  • there are at least two places in the history of life where new information is needed: origin of life, and Cambrian explosion
  • overview of the structure of DNA and protein synthesis (he has helpful pictures and he uses the snap lock blocks, too)
  • the DNA molecule is composed of a sequence of bases that code for proteins, and the sequence is carefully selected to have biological function
  • meaningful sequences of things like computer code, English sentences, etc. require an adequate cause
  • it is very hard to arrive at a meaningful sequence of a non-trivial length by randomly picking symbols/letters
  • although any random sequence of letters is improbable, the vast majority of sequences are gibberish/non-compiling code
  • similarly, most random sequences of amino acids are lab-proven (Doug Axe’s work) to be non-functional gibberish
  • the research showing this was conducted at Cambridge University and published in the Journal of Molecular Biology
  • so, random mutation cannot explain the origin of the first living cell
  • however, even natural selection coupled with random mutation cannot explain the first living cell
  • there must already be replication in order for mutation and selection to work, so they can’t explain the first replicator
  • but the origin of life is the origin of the first replicator – there is no replication prior to the first replicator
  • the information in the first replicator cannot be explained by law, such as by chemical bonding affinities
  • the amino acids are attached like magnetic letters on a refrigerator
  • the magnetic force sticks the letters ON the fridge, but they don’t determine the specific sequence of the letters
  • if laws did determine the sequence of letters, then the sequences would be repetitive
  • the three materialist explanations – chance alone, chance and law, law alone – are not adequate to explain the effect
  • the best explanation is that an intelligent cause is responsible for the biological explanation in the first replicator
  • we know that intelligent causes can produce functional sequences of information, e.g. – English, Java code
  • the structure and design of DNA matches up nicely with the design patterns used by software engineers (like WK!)

There are some very good tips in this lecture so that you will be able to explain intelligent design to others in simple ways, using everyday household items and children’s toys to symbolize the amino acids, proteins, sugar phosphate backbones, etc.

Proteins are constructed from a sequence of amino acids:

A sequence of amino acids forming a protein
A sequence of amino acids forming a protein

Proteins sticking onto the double helix structure of DNA:

Some proteins sticking onto the sugar phosphate backbone
Some proteins sticking onto the sugar phosphate backbone

I highly, highly recommend this lecture. You will be delighted and you will learn something.

Here is an article that gives a general overview of how intelligent design challenges. If you want to read something more detailed about the material that he is covering in the lecture above related to the origin of life, there is a pretty good article here.

There is a good breakdown of some of the slides with helpful flow charts here on Uncommon Descent.

Positive arguments for Christian theism