Tag Archives: Common Ancestry

Can you expect the mainstream media to report honestly on science education?

Investigation in progress
Investigation in progress

Whenever policy makers try to get public schools to teach both sides of issues like evolution or global warming, the mainstream media is there to distort the issues.

With respect to evolution, there are criticisms of elements of the theory from within naturalistic science.

For example, here is an interview with famous biologist Lynn Margulis, published in the radically pro-evolution, pro-naturalism Discover magazine.


Margulis came to view symbiosis as the central force behind the evolution of new species, an idea that has been dismissed by modern biologists. The dominant theory of evolution (often called neo-Darwinism) holds that new species arise through the gradual accumulation of random mutations, which are either favored or weeded out by natural selection. To Margulis, random mutation and natural selection are just cogs in the gears of evolution; the big leaps forward result from mergers between different kinds of organisms, what she calls symbiogenesis. Viewing life as one giant network of social connections has set Margulis against the mainstream in other high-profile ways as well. She disputes the current medical understanding of AIDS and considers every kind of life to be “conscious” in a sense.

Here is something from the interview:

And you don’t believe that natural selection is the answer?

This is the issue I have with neo-Darwinists: They teach that what is generating novelty is the accumulation of random mutations in DNA, in a direction set by natural selection. If you want bigger eggs, you keep selecting the hens that are laying the biggest eggs, and you get bigger and bigger eggs. But you also get hens with defective feathers and wobbly legs. Natural selection eliminates and maybe maintains, but it doesn’t create.

Now, that’s a criticism of the standard theory from a prominent scientist who is a naturalist. She has a naturalistic alternative that she thinks can do the creating. Can we teach her criticism of the standard theory in the public schools? This is what people mean by “teach the controversy”. We don’t mean teach intelligent design, we mean teach the weaknesses of the theory of evolution from within the naturalistic scientific community. But this is apparently too much for journalism graduates to understand.

This article from The Stream explains:

In states like Louisiana, Tennessee, and the current flash point of South Dakota, we have supported responsible academic freedom laws. These laws allow science teachers to present the strengths and weaknesses of neo-Darwinian theory as an explanation of biological novelties. They don’t introduce or protect teaching about intelligent design, and certainly not about any religious doctrine (like creationism). They explicitly extend protection to science instruction alone, and then only when it enriches students’ understanding of subjects that are already part of the curriculum (which ID is not). Yet journalists routinely assert that these laws would shoehorn intelligent design and “creationism” in public school science classes.

In the same context, when we advocate introducing students to “critical thinking” on evolution, with teaching material drawn only from mainstream science, the media claim that “critical thinking” is “code” for intelligent design, or for “intelligent design creationism.” We know that it’s not, and that the “code word” conspiracy theory is utterly false.

The author of that piece tries to explain the difference between criticism of evolution from within mainstream science, and intelligent design, but the journalists just can’t understand what he is saying. There is an example of it here on Evolution News.

New study: fossil discovery adds a new phyla to the explosive Cambrian explosion

Apologetics and the progress of science
Apologetics and the progress of science

It’s Wednesday, so that means another scientific discovery has been made to falsify atheism. Put it on the pile with the others, I guess.

The story from Science Daily reads like Darwinist propaganda, but you can get the main idea if you ignore the fawning naturalistic bias.


A team of Virginia Tech researchers have discovered fossils of kinorhynch worms — commonly known as mud dragons — dating back more than 530 million years.

The historic find — made in South China — fills a huge gap in the known fossil record of kinorhynchs, small invertebrate animals that are related to arthropods, featuring exoskeletons and segmented bodies, but not jointed legs.

The first specimen was unearthed in rocks in Nanjiang, China, in 2013 and more fossils were found later that year and in 2014.

Helping lead the international team of scientists and biomedical engineers who unearthed, studied, and imaged the ancient, armored, worm-like creature is Shuhai Xiao, a professor of geobiology in the Department of Geosciences, part of the College of Science at Virginia Tech.

Dubbed Eokinorhynchus rarus — or rare ancient mud dragon, the newly discovered animal dates back from the Cambrian period and contains five pairs of large bilaterally placed spines on its trunk. It is believed to be related to modern kinorhynchs.

The group’s findings were published in Scientific Reports, a Nature family journal.

“Kinos represent an animal group that is related to arthropods — insects, shrimps, spiders, etc. — which are the most diverse group of animals on the planet,” said Xiao, who refers to kinorhynchs as “kinos” for short. “Although arthropod fossils date back to more than 530 million years ago, no kino fossils have ever been reported. This is a huge gap in the fossil record, with more than 540 million years of evolutionary history undocumented. Our discovery is the first report of kino fossils.”

I took a quick peek at Wikipedia to make sure, and yes, they really are their own phylum. So, brand new phylum.

Evolution News comments on the discovery:

In Figure 2.5 of Darwin’s Doubt, Steve Meyer reports that about 20 of 27 animal phyla with known fossil records appear in the Cambrian period. Prior to this find, phylum Kinorhyncha was not known to have a fossil record. Now we can update Meyer’s tabulation to report that 21 of the 28 phyla with known fossil records apparently first appear — abruptly no less — in the Cambrian explosion of animal body plans.

Despite this non-Darwinian pattern of origin, the papers’ authors speculate that these ancient (and extant) kinorhynchs might shed light on the origin of arthropods, but that’s largely only because they are segmented — as various other living phyla are as well. Given that kinorhynchs entirely lack limbs and also lack arthropod-like eyes, it seems that they aren’t going to help us much towards understanding the unique defining characteristics of arthropods.

The paper also explains that these fossils come from about 535 million years ago in a section of strata bearing the “small shelly fossils,” in the early Cambrian period. As Meyer and I have discussed, some mistakenly cite the “small shelly fossils” (SSFs) as possible evidence of a gradual evolution of the Cambrian animals. But in this case, studies of the SSFs are showing the Cambrian explosion to be more explosive.

I blogged before about the Small Shelly Fossils that are hoped (by naturalists) to be ancestors of the Cambrian phyla, but as the Evolution News article stated, they’re not. Too bad Darwinists!

Positive arguments for Christian theism

Convergence detected in the genetic structure of bats and dolphins

Apologetics and the progress of science
Apologetics and the progress of science

We have to start this post with the definition of convergence in biology.

In evolutionary biology, convergent evolution is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches.

It is the opposite of divergent evolution, where related species evolve different traits.

On a molecular level, this can happen due to random mutation unrelated to adaptive changes; see long branch attraction. In cultural evolution, convergent evolution is the development of similar cultural adaptations to similar environmental conditions by different peoples with different ancestral cultures. An example of convergent evolution is the similar nature of the flight/wings of insects, birds, pterosaurs, and bats.

All four serve the same function and are similar in structure, but each evolved independently.

Jonathan Wells explains the problem that convergence poses for naturalistic evolution:

Human designers reuse designs that work well. Life forms also reuse certain structures (the camera eye, for example, appears in humans and octopuses). How well does this evidence support Darwinian evolution? Does it support intelligent design more strongly?

Evolutionary biologists attribute similar biological structures to either common descent or convergence. Structures are said to result from convergence if they evolved independently from distinct lines of organisms. Darwinian explanations of convergence strain credulity because they must account for how trial-and-error tinkering (natural selection acting on random variations) could produce strikingly similar structures in widely different organisms and environments. It’s one thing for evolution to explain similarity by common descent—the same structure is then just carried along in different lineages. It’s another to explain it as the result of blind tinkering that happened to hit on the same structure multiple times. Design proponents attribute such similar structures to common design (just as an engineer may use the same parts in different machines). If human designers frequently reuse successful designs, the designer of nature can surely do the same.

I’m a software engineer, and we re-use components all the time for different programs that have no “common ancestor”. E.g. – I can develop my String function library and use it in my web application and my Eclipse IDE plug-in, and those two Java programs have nothing in common. So you find the same bits in two different programs because I am the developer of both programs. But the two programs don’t extend from a common program that was used for some other purpose – they have no “common ancestor” program.

Now with that in mind, take a look at this recent article from Science Daily, which Mysterious Micah sent me.


The evolution of similar traits in different species, a process known as convergent evolution, is widespread not only at the physical level, but also at the genetic level, according to new research led by scientists at Queen Mary University of London and published in Nature this week.

The scientists investigated the genomic basis for echolocation, one of the most well-known examples of convergent evolution to examine the frequency of the process at a genomic level.

Echolocation is a complex physical trait that involves the production, reception and auditory processing of ultrasonic pulses for detecting unseen obstacles or tracking down prey, and has evolved separately in different groups of bats and cetaceans (including dolphins).

The scientists carried out one of the largest genome-wide surveys of its type to discover the extent to which convergent evolution of a physical feature involves the same genes.

They compared genomic sequences of 22 mammals, including the genomes of bats and dolphins, which independently evolved echolocation, and found genetic signatures consistent with convergence in nearly 200 different genomic regions concentrated in several ‘hearing genes’.

[…]Consistent with an involvement in echolocation, signs of convergence among bats and the bottlenose dolphin were seen in many genes previously implicated in hearing or deafness.

“We had expected to find identical changes in maybe a dozen or so genes but to see nearly 200 is incredible,” explains Dr Joe Parker, from Queen Mary’s School of Biological and Chemical Sciences and first author on the paper.

“We know natural selection is a potent driver of gene sequence evolution, but identifying so many examples where it produces nearly identical results in the genetic sequences of totally unrelated animals is astonishing.”

Nature is the most prestigious peer-reviewed science journal. This is solid material.

There is an earlier article from 2010 in New Scientist that talked about one of the previous genes that matched for hearing capability.


Bats and dolphins trod an identical genetic path to evolve a vital component of the complex sonar systems they use to pursue and catch prey.

The finding is unusual, because although many creatures have independently evolved characteristics such as eyes, tusks or wings, they usually took diverse genetic routes to get there.

Analysis of a specific gene has now demonstrated that although bats live in air and dolphins in water, where sound travels five times faster, they independently evolved a near-identical gene that allows them to accept high-frequency sound in the ear – vital for sonar.

The gene makes prestin, a protein in hair cells of the cochlea, which is the organ in the inner ear where sonar signals are accepted and amplified. Prestin changes shape when exposed to high-frequency sound, and this in turn deforms the fine hair cells, setting off an electrical impulse to the brain. So the protein has the important jobs of detecting and selecting high-frequency sounds for amplification.

When researchers examined the molecular structure of the prestin gene from a range of animals, they found that the variants in echolocating bats and dolphins were virtually indistinguishable.

Indistinguishable genes in animals that don’t share a common ancestor? Maybe a better explanation for the evidence we have is – common designer.

New study: another example of convergence, this time for geomagnetic navigation

We have to start this post with the definition of convergence in biology.

In evolutionary biology, convergent evolution is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches.

It is the opposite of divergent evolution, where related species evolve different traits.

On a molecular level, this can happen due to random mutation unrelated to adaptive changes; see long branch attraction. In cultural evolution, convergent evolution is the development of similar cultural adaptations to similar environmental conditions by different peoples with different ancestral cultures. An example of convergent evolution is the similar nature of the flight/wings of insects, birds, pterosaurs, and bats.

All four serve the same function and are similar in structure, but each evolved independently.

And now, Evolution News has a story about a new discovery.

Turtles have the ability to navigate by sensing magnetic isolines:

Science Magazine gives a brief review of the findings:

Much like shifting sand, magnetic fields slide slightly over time, and their strength also increases as one moves away from the equator, akin to latitude.This property gives each stretch of coast a unique geographic marker, known as an isoline. The team found that in years when these magnetic isolines moved apart, the turtle nests spread out over a larger area — by 1 or 2 kilometers. Conversely, when isolines converged, the nests squeezed into a smaller patch of beach, suggesting the turtles follow shifting magnetic tracks to their favorite nests. The findings also argue that a magnetic address is imprinted on loggerhead turtles at birth to point the way home.

But so do salmon, and other birds, fishes and mammals:

Remarkably, salmon show this same ability. Brothers and Lohman write:

In a previous study, the migratory route of salmon approaching their natal river was shown to vary with subtle changes in the Earth’s field. Whereas the endpoint of the salmon spawning migration was presumably the same regardless of route, our findings demonstrate for the first time a relationship between changes in Earth’s magnetic field and the locations where long-distance migrants return to reproduce.

Joining the contenders for this skill set are more unrelated animal types:

… our results provide the strongest evidence to date that sea turtles find their nesting areas at least in part by navigating to unique magnetic signatures along the coast. In addition, our results are consistent with the hypothesis that turtles accomplish natal homing largely on the basis of magnetic navigation and geomagnetic imprinting. These findings, in combination with recent studies on Pacific salmon, suggest that similar mechanisms might underlie natal homing in diverse long-distance migrants such as fishes, birds, and mammals.

So here we have a highly-precise navigational ability, able to cue on very faint properties in the earth’s magnetic field, then on olfaction, and possibly on “other supplemental local cues” to find home across thousands of miles. The sensory “instruments” involved are integrated so that they are able to coordinate their functions for the same goal. Furthermore, the baby turtles, with their tiny brains, must have the ability to memorize the natal signatures of odors and magnetic field properties at birth, then recall those memories years later as large adults. (Sea turtles return about every two years to lay eggs.)

That would be a conundrum enough to explain by unguided processes like natural selection. But then, adding to the difficulty for Darwinism, similar abilities are found in distantly related animals like fish, birds, and mammals. Even if a Darwinian could show a possible line of descent from fish to mammal, the abilities involved would have been lost and regained multiple times, because not all fish, birds, and mammals use magnetic navigation. Given the complexities of the sensory systems involved, this would represent a case of “convergent evolution” on steroids. If the origin of this capability in one type of animal is highly implausible by mutation and selection, how about four times or more?

A design perspective, by contrast, would expect that unrelated animals on a common planet would share similar capabilities for their needs. The earth’s magnetic field is global. It isn’t surprising that very different animals would be designed to use that feature of the earth.

How can it be that animals that have no recent common ancestor can have evolved this remarkable ability independently? The best explanation of this convergence is common design, not common descent.

More posts on convergence

Is common ancestry confirmed by molecular and morphological evidence?

Casey Luskin did a good podcast explaining a problem with two kinds of evidence commonly used to argue for common ancestry.


On this episode of ID the Future, Casey Luskin takes a keen-eyed look at Darwin’s tree of life and finds that common descent, far from being confirmed by the data, is actually contradicted by it, as New Scientist pointed out in their cover story, “Why Darwin was wrong about the tree of life.”

Listen in to learn how the data is challenging Darwinist assumptions, and check out “A Primer on the Tree of Life” for more information.

The MP3 file is here.

The paper linked above seems to be exactly what he read out loud in the podcast.

Here is one section from the paper that summarizes everything:

One authoritative review paper by Darwinian leaders in this field stated, “As morphologists with high hopes of molecular systematics, we end this survey with our hopes dampened. Congruence between molecular phylogenies is as elusive as it is in morphology and as it is between molecules and morphology.

Another set of pro-evolution experts wrote, “That molecular evidence typically squares with morphological patterns is a view held by many biologists, but interestingly, by relatively few systematists. Most of the latter know that the two lines of evidence may often be incongruent.

The two methods of determining ancestry are “often incongruent”. What I am looking for in order to be convinced of common ancestry is substantial agreement between morphological phylogenies and molecular phylogenies. I don’t see that, so I am still skeptical of common ancestry. Especially with all the examples of convergence that I keep finding out about.