Tag Archives: Science

Is the presupposition of naturalism a science stopper?

UPDATE: Welcome readers from 4Simpsons! Thanks for the link Neil!

In cosmology, we had to wait decades for the theism-friendly big bang theory to beat out atheism-friendly theories like the eternal universe model, the steady-state model, the oscillating model, etc. Piles of taxpayer money wasted trying to prove atheistic flights of fancy. But in the end, the evidence for the big bang was too much for the atheistic theories, and we beat them out.

Junk DNA

And here is another example of how atheism is bad for scientific inquiry: “Junk DNA”.

The purpose of the genome is to contain the instructions that allow the cell to build functional sequences of smaller components. If the sequences are done right, you get a folded-up protein that can be used for all kinds of things.

But what those parts of the genome that don’t code for proteins? Well, atheists have been calling them “Junk DNA” and hailing it as proof that there is no designer to life. I can remember Christian groups like Reasons to Believe predicting that a purpose for “Junk DNA” would be found. But atheists pooh-pooh’d that idea. Gee, I wonder who was right? The same people who are always right: THEISTS.

Denyse O’Leary cites this Princeton University press release on Post-Darwinist:

Now researchers from Princeton University and Indiana University who have been studying the genome of a pond organism have found that junk DNA may not be so junky after all. They have discovered that DNA sequences from regions of what had been viewed as the “dispensable genome” are actually performing functions that are central for the organism. They have concluded that the genes spur an almost acrobatic rearrangement of the entire genome that is necessary for the organism to grow.

…The term “junk DNA” was originally coined to refer to a region of DNA that contained no genetic information. Scientists are beginning to find, however, that much of this so-called junk plays important roles in the regulation of gene activity. No one yet knows how extensive that role may be.

She’s got a stack of other related links at the bottom of the post.

Commenter ECM also sent me this story from Cornelius Hunter’s new blog.

Excerpt:

One problem with evolution is its strong bias toward viewing everything in biology as a kludge. When a newly discovered structure is examined, evolutionists take one look and conclude it is leftover junk. After all, blind, unguided mutations and other processes just happened to produce everything we see. The evolutionist’s going in position is that biology is a fluke. We’re lucky anything works.

Hunter then cites this passage from some naturalist researchers who study “junk DNA”:

Here we have a molecule that serves an important role in how cells function and survive, but it contains these puzzling ‘junk’ sequences that don’t seem to have any apparent purpose. Our work suggests that this disorder is really a way of creating flexibility, allowing the protein to function as a molecular switch, a process that is thought to go wrong in certain diseases.

Evolution has provided researchers with convenient modular structures, areas that are repeated over and over again to make up proteins, and so we tend to dismiss the interspersed disordered sequences that don’t seem to have any definable structure. Here we show that the weak molecular interactions in a disorganized protein sequence are essential in giving this protein its unique attributes.

Know what? If you substitute “Flying Spaghetti Monster” in there for “Evolution”, it makes just as much sense! Try it! Evolution causes toothpaste to come out of the toothpaste tube when you squeeze it, and Shakespearean rhyming couplets to rhyme, and my Java code to compile. It’s all evolution!

Conclusion

Atheists, always remember this quote from agnostic NASA astronomer Robert Jastrow, regarding the progress of science:

For the scientist who has lived by his faith in the power of reason, the story ends like a bad dream. He has scaled the mountains of ignorance; he is about to conquer the highest peak; as he pulls himself over the final rock, he is greeted by a band of theologians who have been sitting there for centuries.

In the 1920s, there was no theory about a universe that begins to exist out of nothing, no fine-tuning, no DNA, no Cambrian explosion, nothing. Then science progressed, reducing atheism to a kind of childish delusion, still believed by ignorant snake-handlers and people with certain persistent moral, … ah… issues. But that’s what psychiatrists are for!

Science is always for us, it’s never for you. You have faith. Blind faith. We have all the evidence. We invented science, and every new discovery makes your materialism look more silly and naive… you bravely hold out hope for some hopeful Flying Spaghetti Monster to swoop in and rescue your atheism from the big, bad mind-independent reality. When will you grow up?

There is no Flying Spaghetti Monster!

The relationship between science, faith and academic freedom

I blogged recently about atheist philosophers Thomas Nagel and Bradley Monton, informed atheists, who both support the idea that intelligent design could potentially be researched using ordinary scientific methods. I thought it was interesting especially in the case of Nagel, who has this famous quote about his reasons for adopting atheism:

“In speaking of the fear of religion, I don’t mean to refer to the entirely reasonable hostility toward certain established religions and religious institutions, in virtue of their objectionable moral doctrines, social policies, and political influence. Nor am I referring to the association of many religious beliefs with superstition and the acceptance of evident empirical falsehoods. I am talking about something much deeper–namely, the fear of religion itself. I speak from experience, being strongly subject to this fear myself: I want atheism to be true and am made uneasy by the fact that some of the most intelligent and well-informed people I know are religious believers. It isn’t just that I don’t believe in God and, naturally, hope that I’m right in my belief. It’s that I hope there is no God! I don’t want there to be a God; I don’t want the universe to be like that.
(”The Last Word” by Thomas Nagel, Oxford University Press: 1997)

The thing is, Thomas Nagel has written a paper supporting ID as science, and now I’ve learned that he is rejecting Darwinism as a full explanation of human origins. (H/T Denyse O’Leary’s related post at the Post-Darwinist). Nagel contrasts the idea that natural selection is responsible for our mental capacity, or whether some other explanation is needed.

Nagel writes:

I see no reason to believe that the truth lies in the first alternative. The only reason so many people believe it is that advanced intellectual capacities clearly exist, and this is the only available candidate for a Darwinian explanation of their existence. So it all rests on the assumption that every noteworthy characteristic of human beings, or of any other organism, must have a Darwinian explanation. But what is the reason to believe this? Even if natural selection explains all adaptive evolution, there may be developments in the history of species that are not specifically adaptive and can’t be explained in terms of natural selection. Why not take the development of the human intellect as a probable counterexample to the law that natural selection explains everything, instead of forcing it under the law with improbable speculations unsupported by evidence? We have here one of those powerful reductionist dogmas which seem to be part of the intellectual atmosphere we breath.

It’s interesting that Nagel is breaking from the pack, because my post about A. N. Wilson’s return to faith highlighted the peer-pressure that atheists feel with regards to the need to project intelligence to their peers. It’s almost as they feel the need prove themselves as better than other people, perhaps to make up for some past rejection that gave them a deep sense of being unworthy.

Wilson said:

If I bumped into Richard Dawkins (an old colleague from Oxford days) or had dinner in Washington with Christopher Hitchens (as I did either on that trip to interview Billy Graham or another), I did not have to feel out on a limb. Hitchens was excited to greet a new convert to his non-creed and put me through a catechism before uncorking some stupendous claret. “So – absolutely no God?” “Nope,” I was able to say with Moonie-zeal. “No future life, nothing ‘out there’?” “No,” I obediently replied. At last! I could join in the creed shared by so many (most?) of my intelligent contemporaries in the western world – that men and women are purely material beings (whatever that is supposed to mean), that “this is all there is” (ditto), that God, Jesus and religion are a load of baloney: and worse than that, the cause of much (no, come on, let yourself go), most (why stint yourself – go for it, man), all the trouble in the world, from Jerusalem to Belfast, from Washington to Islamabad.

Anyway, Denyse O’Leary also talks about some research done by Jeffrey Schwartz on her blog the Mindful Hack. I saw Schwartz present this research before in a live debate with Michael Shermer, another atheist I like somewhat. (I own, and have watched dozens of debates and hundreds of academic lectures – and I sponsor them, too! I love civil, fact-based disagreements!)

Denyse cites from a forthcoming paper of hers, as follows:

UCLA psychiatrist Jeffrey Schwartz, a practitioner of Buddhist mindfulness, saw OCD as a good candidate for a non- pharmaceutical—essentially non-materialist—approach to treatment….

Schwartz used neuroscience techniques to identify the cause of the disorder. Specifically, the cause is most likely a defect in the neural circuitry connecting the orbitofrontal cortex, cingulate gyrus, and basal ganglia, from which panic and compulsion are generated. When this “worry circuit” is working properly, we worry about genuine risks and feel the urge to reduce them. But, Schwartz found, when that modulation is faulty, as it is when OCD acts up, the error detector can be overactivated. It becomes locked into a pattern of repetitive firing. The firing triggers an overpowering feeling that something is wrong, accompanied by compulsive attempts to somehow make it right.

He then developed a four-step program (Relabel, Reattribute, Reassign, and Revalue) to help patients identify and reassign OCD thoughts, until they felt that they were diminishing in severity. Schwartz was not simply getting patients to change their opinions, but to change their brains. Subsequent brain imaging showed that the change in focus of attention substituted a useful neural circuit for a useless one. For example, it substituted “go work in the garden” for “wash hands seven more times.” By the time the neuronal traffic from the many different activities associated with gardening began to exceed the traffic from washing the hands, the patient could control the disorder without drugs. The mind was changing the brain.

Schwartz called this “mental effort” in the debate, and he used the treatment successfully on people like Leonardo DiCaprio.

The issue of mind as a non-material cause is an area of specialty for Denyse. She recently wrote a book on it for Harper-Collins called “The Spiritual Brain”. I bought 7 copies of that book and gave them to 6 of my friends for their Christmas presents. (One was for me!) Check it out. I hate (but use) philosophical arguments for substance dualism. Her book provides lots of hard scientific evidence that I prefer to use instead.

Atheism, science and free speech

As Denyse O’Leary notes in her post on Colliding Universes, Christian researchers in the sciences have to jump through hoops to keep their jobs and get tenure, in an establishment dominated by activist atheists. She links to this story in Science, regarding a Christian professor who is brilliant, but who has to watch his step in secular-leftist-dominated academia.

Szilágyi sees his religious faith and his research efforts as two complementary aspects of his life. Within the scientific environment, “I have some options where I can express my faith,” Szilágyi says. He directly referred to God both in the acknowledgements of his master’s and doctoral dissertations and while receiving his awards. He runs a Bible-study group for young adults, and together with a friend he founded a Christian scientific group.

But although Szilágyi’s views often lie far outside the scientific mainstream, he expresses those views only off-campus and in his personal time. For him, “the debate over evolution, design, creation, supernatural intelligence, etc., is not a scientific question in the first place but the collision of worldviews, the confrontation of materialism and idealism,” he says. He takes the Bible literally, but when he lectures on the subject–outside of work–he presents what he calls “the options” and indicates which one “to me … seems to be more probable.” But he insists that it is up to “everybody to make his or her own decision.”

“As a Christian who works in the field of science, I find it quite important to deal with the relation of Christianity and science,” Szilágyi says. But “I know that it is a minefield in today’s scientific life and can be quite dangerous for one’s scientific career. … Therefore, I do these activities absolutely separately from my university work. … I am very cautious and careful that whenever I am talking [about these issues] I do not represent my university.

“My belief is very important for my career because this is the first thing that gives me my motivations so that I could work hard and I could achieve the best I can,” Szilágyi says.

Denyse, who sees the battlefield better than anyone I know, comments:

It is sad when talented people must grovel and cringe just to keep their jobs. The thing is, in the end, that never works.

“Theistic evolution” is just a way of adjusting to a world run by atheists.

Practical questions like “Does the world show evidence of design” are scientific if the answer appears to be no, but unscientific if it appears to be yes.

Denyse also wrote about this comment on the Post-Darwinist, which emerged during the recent Texas School Board hearings.

“If our students do not feel the freedom to simply raise their hand and ask a question in science class, then we are no longer living in the United States of America.”

Common sense, combined with the pressure of at least 14,000 constituent communications in favor of allowing students to discuss all sides of science theories, finally prevailed.

You may also remember the case of Guillermo Gonzalez, who, despite outperforming virtually everyone in his department, was denied tenure thanks to a crusade by an activist atheist professor of religious studies, Hector Avalos. Persecution of outspoken Christians by secularists goes on all the time in academia. If you come out as a Christian, the secularists will be offended, and then you have to suffer the consequences.

And don’t forget, as public Christianity declines in the face of persecution by secularists, so has the right to free speech. The Democrats have recently tabled bills to enact hate crime laws and to imprison bloggers who are critical of the government.

Denyse O’Leary tells about Uncommon Descent’s contest to win FREE STUFF

Denyse has started up a contest over at Uncommon Descent where you can win the following stuff:

10 DVDs of Expelled,courtesy the producers.

10 DVDs of Privileged Planet, courtesy the producers.

5 subscriptions, including back issues, to the excellent Christian/theistic science and culture mag, Salvo, complete with recent back issues, courtesy the editor-in-chief.

I already have those DVDs but I want the subscription to Salvo.

Now, what must I do to win? Denyse says:

I will pose a question based on a recent news story, and ask for responses within two weeks. I will publish the winning response in a subsequent post.

You must go to Uncommon Descent and register to comment. (You will not receive any solicitations – at least none that originate from us.)

Rules:
1. No more than 400 words in response. I will select the response I find most interesting and print it as a post. Be succinct.
2. New ideas impress me, even if I disagree. Rants and myths don’t. Re abuse: Uncommon Descent is not competing for Troll Hole of the Year, so …
3. I will not correspond with anyone about the award. My In Tray is already a natural disaster. If you don’t win, try again. And who knows, if this contest takes off, I may be offered more prizes.

The first question will come shortly.

Well, according to Denyse’s latest post on Colliding Universes, the first question is here!

This is Contest Question 1 for Earn Free Stuff: Does the multiverse help science make sense – or simply destroy science?

Question: For a free copy of Expelled, is this a way to do science? Note, you must register at Uncommon Descent to comment.

She has a link to an article that will help you answer, plus you can read my posts on the multiverse:

OK, now get right to work on your answer, and I’ll work on my answer. Denyse says that each contest will last about two weeks!

By the way, Denyse is a professional writer and editor. So watch your spelling and grammar!