Tag Archives: Darwinism

Polemics

Is the concept of moral responsibility compatible with physicalism / materialism?

2 Comments

I saw that Brian Auten of Apologetics 315 linked to this post by J. Warner Wallace.

Excerpt:

When examining the causes for an event (such as a death) we can separate them into two categories: event causation and agent causation (prior physical events cause things to happen and free agents cause things to happen). It’s important to recognize that free agents alone have the freedom to act or respond without a prior physical causal event. Physical objects, like dominoes, cannot cause themselves to fall over; they require a prior event to cause them to fall. But you and I have the ability to cause the first domino to fall as a simple matter of choice (we don’t need a prior event to cause this action). You can’t blame a car for running over a victim; the car is simply a physical object subject to a series of physical processes, none of which can be held morally culpable. But we can blame thedriver of the car for driving the car over the victim. The driver is a free agent, and we recognize that his choices are just that: free choices. The driver is not like the car. His choice is not simply the result of a series of purely physical processes, like dominoes falling. He had the freedom to choose otherwise, and this is why we seek to arrest and prosecute him.

Our recognition of the moral culpability of the driver (rather than the car) is an admission that materialism (physicalism) fails to explain who we are as humans. Consider the following argument:

No Physical System is a Free Agent
Physical systems are either “determined” (one event necessarily following the other) or “random”

Therefore No Physical System Has Moral Responsibility
Moral responsibility requires moral freedom of choice

Human Beings DO Have Moral Responsibility
We recognize that each of us has the responsibility and choice to act morally, and indeed, we seek to hold each other legally accountable for each other’s free-will choices

Therefore, Human Beings Are NOT Simply Physical Systems
Our recognition of moral responsibility and our efforts to hold each other accountable are irrational and unwarranted if humans are merely physical systems

If we, as humans, are only physical systems (merely matter), we ought to stop trying to hold each other accountable for misbehavior. In fact, there can be no misbehavior if we are only physical brains and bodies; there can only be behavior. Our actions have no moral content at all unless we truly have the freedom to choose and the ability to break the bondage of physical event causation.

I finally learned what the “Twinkie defense” was by reading that post. It’s worth it for that reason alone.

This quote by JWW reminded me of a famous chapter in Theodore Dalrymple’s famous book “Life at the Bottom”, in which he explains the worldview of the lower classes in Britain. The chapter is called “The Knife Went In“, and it shows how people in the underclass describe their crimes in a way that completely minimizes their own free choices and their own responsibilities.

Take a look:

It is a mistake to suppose that all men, or at least all Englishmen, want to be free. On the contrary, if freedom entails responsibility, many of them want none of it. They would happily exchange their liberty for a modest (if illusory) security. Even those who claim to cherish their freedom are rather less enthusiastic about taking the consequences of their actions. The aim of untold millions is to be free to do exactly as they choose and for someone else to pay when things go wrong.

In the past few decades, a peculiar and distinctive psychology has emerged in England. Gone are the civility, sturdy independence, and admirable stoicism that carried the English through the war years. It has been replaced by a constant whine of excuses, complaint, and special pleading. The collapse of the British character has been as swift and complete as the collapse of British power.

Listening as I do every day to the accounts people give of their lives, I am struck by the very small part in them which they ascribe to their own efforts, choices, and actions. Implicitly, they disagree with Bacon’s famous dictum that “chiefly the mould of a man’s fortune is in his own hands.” Instead, they experience themselves as putty in the hands of fate.

It is instructive to listen to the language they use to describe their lives. The language of prisoners in particular teaches much about the dishonest fatalism with which people seek to explain themselves to others, especially when those others are in a position to help them in some way. As a doctor who sees patients in a prison once or twice a week, I am fascinated by prisoners’ use of the passive mood and other modes of speech that are supposed to indicate their helplessness. They describe themselves as the marionettes of happenstance.

Not long ago, a murderer entered my room in the prison shortly after his arrest to seek a prescription for the methadone to which he was addicted. I told him that I would prescribe a reducing dose, and that within a relatively short time my prescription would cease. I would not prescribe a maintenance dose for a man with a life sentence.

“Yes,” he said, “it’s just my luck to be here on this charge.”

Luck? He had already served a dozen prison sentences, many of them for violence, and on the night in question had carried a knife with him, which he must have known from experience that he was inclined to use. But it was the victim of the stabbing who was the real author of the killer’s action: if he hadn’t been there, he wouldn’t have been stabbed.

My murderer was by no means alone in explaining his deed as due to circumstances beyond his control. As it happens, there are three stabbers (two of them unto death) at present in the prison who used precisely the same expression when describing to me what happened. “The knife went in,” they said when pressed to recover their allegedly lost memories of the deed.

The knife went in—unguided by human hand, apparently. That the long-hated victims were sought out, and the knives carried to the scene of the crimes, was as nothing compared with the willpower possessed by the inanimate knives themselves, which determined the unfortunate outcome.

I wonder how much the secularism and atheism of the Britain academics has now seeped down to the lower classes and caused them to view themselves as lumps of meat or animals, rather than responsible free agents. Britain is the country of Charles Darwin and the idea of unguided Darwinian evolution. If you believe that you are an animal who evolved by accident in an accidental universe, then you don’t believe in free will, moral choices or moral obligations. The funniest thing in the world to me is how atheists go about their lives helping themselves to moral language that is not grounded by their worldview. Like parrots who have been trained to talk about the stock market. There is no realm of objective moral values and duties on atheism, so why are they using moral language and making moral judgments? On their view right and wrong are just social customs and conventions that vary by time and place, and human actions are biologically determined anyway. There are no choices. There is no responsibility.

You can read the whole Dalrymple book for free online, and I’ve linked to all the chapters in this one post.

Commentary

The Economist: some problems with the peer-review process

1 Comment

From The Economist, of all places.

Excerpt:

The idea that the same experiments always get the same results, no matter who performs them, is one of the cornerstones of science’s claim to objective truth. If a systematic campaign of replication does not lead to the same results, then either the original research is flawed (as the replicators claim) or the replications are (as many of the original researchers on priming contend). Either way, something is awry.

It is tempting to see the priming fracas as an isolated case in an area of science—psychology—easily marginalised as soft and wayward. But irreproducibility is much more widespread. A few years ago scientists at Amgen, an American drug company, tried to replicate 53 studies that they considered landmarks in the basic science of cancer, often co-operating closely with the original researchers to ensure that their experimental technique matched the one used first time round. According to a piece they wrote last year in Nature, a leading scientific journal, they were able to reproduce the original results in just six. Months earlier Florian Prinz and his colleagues at Bayer HealthCare, a German pharmaceutical giant, reported in Nature Reviews Drug Discovery, a sister journal, that they had successfully reproduced the published results in just a quarter of 67 seminal studies.

Let’s take a look at some of the problems from the article.

Problems with researcher bias:

Other data-heavy disciplines face similar challenges. Models which can be “tuned” in many different ways give researchers more scope to perceive a pattern where none exists. According to some estimates, three-quarters of published scientific papers in the field of machine learning are bunk because of this “overfitting”, says Sandy Pentland, a computer scientist at the Massachusetts Institute of Technology.

Problems with journal referees:

Another experiment at the BMJ showed that reviewers did no better when more clearly instructed on the problems they might encounter. They also seem to get worse with experience. Charles McCulloch and Michael Callaham, of the University of California, San Francisco, looked at how 1,500 referees were rated by editors at leading journals over a 14-year period and found that 92% showed a slow but steady drop in their scores.

As well as not spotting things they ought to spot, there is a lot that peer reviewers do not even try to check. They do not typically re-analyse the data presented from scratch, contenting themselves with a sense that the authors’ analysis is properly conceived. And they cannot be expected to spot deliberate falsifications if they are carried out with a modicum of subtlety.

Problems with fraud:

Fraud is very likely second to incompetence in generating erroneous results, though it is hard to tell for certain. Dr Fanelli has looked at 21 different surveys of academics (mostly in the biomedical sciences but also in civil engineering, chemistry and economics) carried out between 1987 and 2008. Only 2% of respondents admitted falsifying or fabricating data, but 28% of respondents claimed to know of colleagues who engaged in questionable research practices.

Problems releasing data:

Reproducing research done by others often requires access to their original methods and data. A study published last month inPeerJ by Melissa Haendel, of the Oregon Health and Science University, and colleagues found that more than half of 238 biomedical papers published in 84 journals failed to identify all the resources (such as chemical reagents) necessary to reproduce the results. On data, Christine Laine, the editor of the Annals of Internal Medicine, told the peer-review congress in Chicago that five years ago about 60% of researchers said they would share their raw data if asked; now just 45% do. Journals’ growing insistence that at least some raw data be made available seems to count for little: a recent review by Dr Ioannidis which showed that only 143 of 351 randomly selected papers published in the world’s 50 leading journals and covered by some data-sharing policy actually complied.

Critics of global warming have had problems getting at data before, as Nature reported here:

Since 2002, McIntyre has repeatedly asked Phil Jones, director of CRU, for access to the HadCRU data. Although the data are made available in a processed gridded format that shows the global temperature trend, the raw station data are currently restricted to academics. While Jones has made data available to some academics, he has refused to supply McIntyre with the data. Between 24 July and 29 July of this year, CRUreceived 58 freedom of information act requests from McIntyre and people affiliated with Climate Audit. In the past month, the UK Met Office, which receives a cleaned-up version of the raw data from CRU, has received ten requests of its own.

Why would scientists hide their data? Well, recall that the Climategate scandal resulted from unauthorized release of the code used to generate the data used to promote global warming alarmism. The leaked code showed that the scientists had been generating faked data using a “fudge factor”.

Elsewhere, leaked e-mailed from global warmists revealed that they do indeed suppress articles that are critical of global warming alarmism:

As noted previously, the Climategate letters and documents show Jones and the Team using the peer review process to prevent publication of adverse papers, while giving softball reviews to friends and associates in situations fraught with conflict of interest. Today I’ll report on the spectacle of Jones reviewing a submission by Mann et al.

Let’s recall some of the reviews of articles daring to criticize CRU or dendro:

I am really sorry but I have to nag about that review – Confidentially I now need a hard and if required extensive case for rejecting (Briffa to Cook)
…
If published as is, this paper could really do some damage. It is also an ugly paper to review because it is rather mathematical, with a lot of Box-Jenkins stuff in it. It won’t be easy to dismiss out of hand as the math appears to be correct theoretically, (Cook to Briffa)
…
Recently rejected two papers (one for JGR and for GRL) from people saying CRU has it wrong over Siberia. Went to town in both reviews, hopefully successfully. (Jones to Mann)

One last quote from the Economist article. One researcher submitted a completely bogus paper to many journals, and many of them accepted it:

John Bohannon, a biologist at Harvard, recently submitted a pseudonymous paper on the effects of a chemical derived from lichen on cancer cells to 304 journals describing themselves as using peer review. An unusual move; but it was an unusual paper, concocted wholesale and stuffed with clangers in study design, analysis and interpretation of results. Receiving this dog’s dinner from a fictitious researcher at a made up university, 157 of the journals accepted it for publication.

Dr Bohannon’s sting was directed at the lower tier of academic journals. But in a classic 1998 study Fiona Godlee, editor of the prestigious British Medical Journal, sent an article containing eight deliberate mistakes in study design, analysis and interpretation to more than 200 of the BMJ’s regular reviewers. Not one picked out all the mistakes. On average, they reported fewer than two; some did not spot any.

The Economist article did not go into the problem of bias due to worldview presuppositions, though. So let me say something about that.

A while back Casey Luskin posted a list of problems with peer review.

Here was one that stuck out to me:

Point 5: The peer-review system is often biased against non-majority viewpoints.
The peer-review system is largely devoted to maintaining the status quo. As a new scientific theory that challenges much conventional wisdom, intelligent design faces political opposition that has nothing to do with the evidence. In one case, pro-ID biochemist Michael Behe submitted an article for publication in a scientific journal but was told it could not be published because “your unorthodox theory would have to displace something that would be extending the current paradigm.” Denyse O’Leary puts it this way: “The overwhelming flaw in the traditional peer review system is that it listed so heavily toward consensus that it showed little tolerance for genuinely new findings and interpretations.”

Recently, I summarized a podcast on the reviewer bias problem featuring physcist Frank Tipler. His concern in that podcast was that peer-review would suppress new ideas, even if they were correct. He gave examples of this happening. Even a paper by Albert Einstein was rejected by a peer-reviewed journal. Elsewhere, Tipler was explicitly told to remove positive references to intelligent design in order to get his papers published. Tipler’s advice was for people with new ideas to bypass the peer-reviewed journal system entirely.

Speaking about the need to bypass peer-review, you might remember that the Darwinian hierarchy is not afraid to have people sanctioned if they criticize Darwinism in peer-reviewed literature.

Recall the case of Richard Sternberg.

Excerpt:

In 2004, in my capacity as editor of The Proceedings of the Biological Society of Washington, I authorized “The Origin of Biological Information and the Higher Taxonomic Categories” by Dr. Stephen Meyer to be published in the journal after passing peer-review. Because Dr. Meyer’s article presented scientific evidence for intelligent design in biology, I faced retaliation, defamation, harassment, and a hostile work environment at the Smithsonian’s National Museum of Natural History that was designed to force me out as a Research Associate there. These actions were taken by federal government employees acting in concert with an outside advocacy group, the National Center for Science Education. Efforts were also made to get me fired from my job as a staff scientist at the National Center for Biotechnology Information.

So those are some of the issues to consider when thinking about the peer-review process. My view is that peer-reviewed evidence does count for something in a debate situation, but as you can see from the Economist article, it may not count for as much as it used to. I think my view of science in general has been harmed by what I saw from physicist Lawrence Krauss in his third debate with William Lane Craig. If a scientist can misrepresent another scientist and not get fired by his employer, then I think we really need to be careful about the level of honesty in the academy.

News

UC Berkeley paleontologist Charles Marshall’s dishonest review of “Darwin’s Doubt”

1 Comment

There have been a series of Evolution News posts responding to a critical review of Darwin’s Doubt, published in the journal Science. I have been keeping up with them, but when I read this post by Casey Luskin about a challenge from Charles Marshall against Meyer’s book, I really felt that I had to blog about it.

You have to read this to believe it:

In his review of Darwin’s Doubt in the journal Science, UC Berkeley paleontologist Charles Marshall claims that Stephen Meyer “completely omits mention of the Early Cambrian small shelly fossils,” which he claims causes Meyer “to exaggerate the apparent suddenness of the Cambrian explosion.” Yet both of Marshall’s claims are false. Meyer does not fail to mention the small shelly fossils and he does not exaggerate the brevity of the Cambrian explosion.

In the first place, Marshall has his facts wrong. Meyer does discuss the small shelly fossils on page 425 of Darwin’s Doubt. Meyer writes as follows:

The Cambrian period 543 mya is marked by the appearance of small shelly fossils consisting of tubes, cones, and possibly spines and scales of larger animals. These fossils, together with trace fossils, gradually become more abundant and diverse as one moves upward in the earliest Cambrian strata (the Manykaian Stage, 543-530 mya).

Nevertheless, although Meyer discusses the small shelly fossils, he does not treat them as a solution to the problem of the explosion of morphological novelty that arises later in in the Cambrian period. The small shelly fossils appear in the fossil record at the base of the Cambrian period about 542-543 million years ago. The main pulse of morphological innovation that Cambrian paleontologists commonly refer to as the “Cambrian explosion” first begins about 530 million years ago and then lasts about 10 years through the Tommotian and Adtabanian stages of the Cambrian period. During the first 5-6 million year stage (the Tommotian) of the explosion, between 14-16 novel phyla first appear in the fossil record. Without actually asserting that the small shelly fossils somehow explain the subsequent explosion of all these novel forms of animal life (or even that the small shelly fossils represent ancestors to all, or some, of these forms), Marshall faults Meyer for not treating them as part of the Cambrian explosion.

Now from this, you might expect that other biologists who do not believe in intelligent design think two things. One, that these fossils are important to explaining the Cambrian explosion. And two, that these fossils count as part of the Cambrian explosion – extending the period of innovation from 10 million years (at the most!) to 23 million years. In fact, you might expect that Marshall thinks that the small, shelly fossils DO explain the Cambrian explosion, and that the Cambrian explosion DID last 23 million years, and not 10 million.

But you’d be wrong – all of this nonsense about SSF is just a mendacious smokescreen to smear Meyer:

For example, in a 2006 paper in Annual Reviews of Earth and Planetary Sciences, Marshall acknowledges that these fossils are of unclear evolutionary affinities and importance. He calls them “largely problematic fossils” that are “hard to diagnose, even at the phylum level.” Figure 1 of his paper portrays them as apparently disconnected to the later radiation of Cambrian animals. This impression is reinforced in the text of his article where he notes that the small shelly fossils for the most part are “problematic” organisms of unknown classification… 

Marshall himself does not think that the SSF are an explanation for the Cambrian explosion – he only insinuated that in his review in order to smear Meyer.

In fact, other naturalists agree with Meyer (and Marshall!) that these SSFs are not part of the explanation for the explosion in new information:

Other authorities agree that these small shelly fossils [SSFs] are of unclear evolutionary significance and affinity. In his book On the Origin of Phyla, James Valentine argues that the SSFs “are very difficult indeed to interpret.” Valentine’s 2013 book, The Cambrian Explosion, co-written with Douglas Erwin, notes that “many SSFs are still poorly understood.” Simon Conway Morris found them so unimportant that he does not mention them in either of his authoritative books on the Cambrian explosion (Crucible of Creation or Life’s Solution).

Valentine and Conway Morris are two of the top experts on the Cambrian explosion. Neither is a proponent of intelligent design.

But wait! There’s still more dishonesty from Marshall!

Marshall also argues that Meyer is mistating the length of the Cambrian explosion:

But what about the claim that Darwin’s Doubt exaggerated the brevity of the Cambrian explosion? Should Meyer have included the appearance of the early Cambrian small shelly fossils as part of the explosion when he estimated the length of that event? Not according to a very recent paper by Marshall himself. In 2010, Marshall co-wrote with James Valentine in the journal Evolution (emphases added):

By the beginning of the Cambrian Period, near 543 million years ago, a few kinds of “small shelly” fossils are found, <2mm in largest dimension. The small shellys rose to a peak in abundance and diversity during the period from 530 to 520 million years ago, when representatives of living phyla are found among them. During that same period, a chiefly larger-bodied invertebrate fauna of up to a dozen phyla, and including many soft-bodied forms, is also first represented by fossils. This geologically abrupt appearance of fossils representing quite disparate bodyplans of many living metazoan phyla is termed the Cambrian explosion…

Let’s unpack the construction of this paragraph, in which Marshall explains the length of the Cambrian explosion in relation to the small shelly fossils. Starting at the end of the quote, Marshall and Valentine equate “the Cambrian explosion” with the “geologically abrupt appearance of fossils representing quite disparate body plans.” They further identify this period with “that same period” wherein “a chiefly larger-bodied invertebrate fauna of up to a dozen phyla, and including many soft-bodied forms, is also first represented by fossils.” Marshall and Valentine also equate that period of time with “the period from 530 to 520 million years ago” and distinguish it from the earlier time in which the first small shelly fossils arose. Thus, according to Marshall — in a co-authored technical paper written in 2010 — the Cambrian explosion does not begin with the first appearance of the small shelly fossils 543 million years ago, or during the earliest part of the Cambrian period. Rather, he and fellow paleontologist James Valentine affirm that the explosion begins about 530 million years ago and lasted to about 520 million years — a date consistent with what Valentine has written elsewhere, including in his recent book with Erwin that Marshall cites approvingly in his review of Meyer.

Thus, by Marshall’s own admission, (a) the appearance of small shelly fossils around 543 million years ago does not mark the beginning of the Cambrian explosion, and (b) the Cambrian explosion should be dated to 530 to 520 million years when we see the “abrupt appearance” of many disparate body plans, long after the small shellies appear. This means that Marshall has acknowledged in print that the “Cambrian explosion” itself lasted only about 10 million years — just as Meyer affirmed in Darwin’s Doubt. Indeed, Marshall and Valentine affirm that SSFs appear long before the primary explosive radiation of Cambrian animals and they affirm a 10-million year duration for the Cambrian explosion.

So here you have a naturalist who is so desperate to smear a proponent of intelligent design that he has to resort to outright deception – deceptions which he knows are false from his own writings!

This reminds me of how Lawrence Krauss misrepresented that e-mail from Vilenkin during his debate with William Lane Craig. Apparently, naturalists just aren’t bound by the same sense of morality as theists. Should we be surprised that people who repudiate the idea of objective morality would then proceed to act dishonestly like this? In an accidental universe, anything goes – and truth is not as important as getting ahead in your career by any means necessary.

So the take away lesson for the rest of us is this: Sometimes you don’t need to understand all the scientific details exhaustively in order to know what to think about a controversial issue. You just have to spot the liar.

By the way, Dr. Meyer has some comments of his own about these small, shelly fossils in this post.