Tag Archives: Darwin

New study confirms that predictions about junk DNA by Darwinian naturalists are false

First, let’s see what Darwinian evolutionists predict about junk DNA, before we look at what the experiments show.

Here’s biologist John Timmer to explain the orthodox Darwinian view of DNA from 2007:

Personally, I fall into the “it’s all junk” end of the spectrum. If almost all of these sequences are not conserved by evolution, and we haven’t found a function for any of them yet, it’s hard to see how the “none of it’s junk” view can be maintained. There’s also an absence of support for the intervening view, again because of a lack of evidence for actual utility. The genomes of closely related species have revealed very few genes added from non-coding DNA, and all of the structural RNA we’ve found has very specific sequence requirements. The all-junk view, in contrast, is consistent with current data.

Got that? According to Darwinists, DNA is almost entirely junk – this is what is consistent with the view that creatures have evolved through a process of random mutation and selection. The estimates that I’ve seen from evolutionary biologists range from 95% to 99% junk. Now let’s compare the religion with science, and separate mythology from reality.

Now let’s compare that with intelligent design theorist William Dembski’s view of “junk” DNA, from 1998:

Even if we have a reliable criterion for detecting design, and even if that criterion tells us that biological systems are designed, it seems that determining a biological system to be designed is akin to shrugging our shoulders and saying God did it. The fear is that admitting design as an explanation will stifle scientific inquiry, that scientists will stop investigating difficult problems because they have a sufficient explanation already.

But design is not a science stopper. Indeed, design can foster inquiry where traditional evolutionary approaches obstruct it. Consider the term “junk DNA.” Implicit in this term is the view that because the genome of an organism has been cobbled together through a long, undirected evolutionary process, the genome is a patchwork of which only limited portions are essential to the organism. Thus on an evolutionary view we expect a lot of useless DNA. If, on the other hand, organisms are designed, we expect DNA, as much as possible, to exhibit function. And indeed, the most recent findings suggest that designating DNA as “junk” merely cloaks our current lack of knowledge about function… Design encourages scientists to look for function where evolution discourages it.

Now let’s look at the experimental evidence and see whose prediction was proven right by the progress of science.

Science Daily reports on a new study that confirms the previous study that falsified Darwinian predictions about junk DNA.

Excerpt:

Researchers from the Gene and Stem Cell Therapy Program at Sydney’s Centenary Institute have confirmed that, far from being “junk,” the 97 per cent of human DNA that does not encode instructions for making proteins can play a significant role in controlling cell development.

[…]Using the latest gene sequencing techniques and sophisticated computer analysis, a research group led by Professor John Rasko AO and including Centenary’s Head of Bioinformatics, Dr William Ritchie, has shown how particular white blood cells use non-coding DNA to regulate the activity of a group of genes that determines their shape and function. The work is published today in the scientific journalCell.

“This discovery, involving what was previously referred to as “junk,” opens up a new level of gene expression control that could also play a role in the development of many other tissue types,” Rasko says. “Our observations were quite surprising and they open entirely new avenues for potential treatments in diverse diseases including cancers and leukemias.”

Now, this is yet another falsification of Darwinism, to go with the other papers that I keep posting about new research that falsifies Darwinism. How many papers do we need to falsify Darwinism? Or maybe belief in Darwinism is like belief in naturalism: just a philosophical presupposition that is not accountable to the evidence at all.

New PNAS study: maximum animal diversity exists at the beginning of the fossil record

From Phys.org – news of a study that is lethal to orthodox Darwinian belief. This is huge.

Excerpt:

Our understanding of how animals on the planet evolved may be wrong, according to scientists at the University.

In a new paper, recently published in the Proceedings of the National Academy of Sciences, evolutionary biologists from the Department of Biology & Biochemistry looked at nearly one hundred fossil groups to test the notion that it takes groups of animals many millions of years to reach their maximum diversity of form.

Contrary to popular belief, not all animal groups continued to evolve fundamentally new morphologies through time. The majority actually achieved their greatest diversity of form (disparity) relatively early in their histories.

Lead researcher from the Department of Biology & Biochemistry, Dr Matthew Wills said: “This pattern, known as ‘early high disparity’, turns the traditional V-shaped cone model of evolution on its head. What is equally surprising in our findings is that groups of animals are likely to show early-high disparity regardless of when they originated over the last half a billion years. This isn’t a phenomenon particularly associated with the first radiation of animals, or periods in the immediate wake of mass extinctions.”

The team used published descriptions of extinct groups in order to construct ‘morphospaces’; empirical spaces in which anatomically similar species plotted close together, and more dissimilar species plotted further apart. By looking at the manner in which the occupied ‘volume’ of space changed through time, they were able to track changes in morphological disparity.

Evolution News analyzes how the authors of the study explain away their findings to keep faith with Darwin.

Excerpt:

Why did 20 or more separate animal phyla suddenly appear in the geological blink of an eye? Because “Clades reach highest morphological disparity early in their evolution,” answer Martin Hughes, Sylvain Gerber, and Matthew Albion Will… The Cambrian animals exploded onto the scene because evolution works fast sometimes. It seems to be a pattern that high disparity occurs early on. Must be a law of nature. What, you’ve got a problem with that?

These three biologists from the University of Bath took a bath in their own assumptions. They don’t deny that the animals appear suddenly. They just believe that when opportunity arises, evolution works fast to fill up the landscape with endless forms most beautiful. Under the section, “Why Do Clades Have Early High Disparity?” they say:

What might explain the prevailing pattern of early high disparity in clade evolution? Both ecological and developmental explanations have been proposed, and our results remain consistent with both. The “empty ecospace” modelpredicts that clades will radiate and diversify more rapidly when colonizing a new environment. This colonization may occur because ecospace has been vacated by other occupants (e.g., in the wake of some other extinction, typically the result of external, physical factors) or because a hitherto inaccessible environment or other resource has been rendered viable by the acquisition of some novel, “key” adaptation or series of characters (an intrinsic, biological trigger). Morphological change under these circumstances may be rapid eitherbecause transitions are unusually large or because rates of cladogenesis areunusually high (even with “normal” step sizes at each splitting event). (Emphasis added, reference numbers omitted.)

Jaws should drop at that “explanation.” If Hughes, Gerber and Wills were simply describing what is found in the fossil record — the sudden appearance of complex animals — it would be one thing. But they attempted to explain how these complex animals appeared, so suddenly as Jonathan Wells described in the film Darwin’s Dilemma, that it’s comparable to less than two minutes on a twenty-four-hour clock.

[…]As Stephen Meyer shows in Darwin’s Doubt, prior to the Cambrian explosion there were only microbes, sponges and the enigmatic Ediacaran fauna that most paleontologists do not consider related to the Cambrian animals. There were no jointed appendages, eyes, guts, nervous systems or any of the other organs, tissue types and body plans that characterize Cambrian phyla. What kind of Darwinian “miracle” would it take to get all those complex traits in blink of an eye? Calling it “cladogenesis” is like calling the simultaneous chance appearance of cars, boats, and airplanes “vehicle-o-genesis.”

The model has striking similarities to the old notion of Punctuated Equilibrium discussed in Chapter 7 of Darwin’s Doubt. In fact, the PNAS paper was edited by Steven Stanley, “an early advocate of the punctuated equilibrium model” according to Meyer (p. 137). As such, this new model is really a throwback to the old “punk eek,” and suffers from the same drawbacks: it’s an attempt to explain away the absence of evidence for evolution by claiming, without any mechanism better than old-fashioned neo-Darwinism, why the fossil record shows a discontinuous pattern, not a record of a gradually branching tree.

There’s a lot more in that Evolution News article.

Now, I’m pretty sure I read about this upside-down tree of life years ago in a little book by biologist Jonathan Wells entitled “Icons of Evolution“. Dr. Wells made the case that Darwin’s iconic picture of “the tree of life” should really be inverted. Darwin thought that the root came early in the fossil record, and the branches came later – by mutation and selection. The truth is that the branches come first. The diversity is all at the beginning of the fossil record. This falsifies evolution (again).

Is this new study going to make the naturalists change their religion? Probably not. Because science has nothing to do with the presupposition of naturalism. Darwinists presuppose naturalism for other reasons that are insulated from experimental science. It’s a faith commitment – and they don’t care about revising their faith when the progress of science reveals new facts.

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Walter Bradley: three scientific phenomena that point to a designed universe

Dr. Walter L. Bradley
Dr. Walter L. Bradley

Dr. Walter L. Bradley (C.V. here) is the Distinguished Professor of Engineering at Baylor.

Here’s a bio:

Walter Bradley (B.S., Ph.D. University of Texas at Austin) is Distinguished Professor of Engineering at Baylor. He comes to Baylor from Texas A&M University where he helped develop a nationally recognized program in polymeric composite materials. At Texas A&M, he served as director of the Polymer Technology Center for 10 years and as Department Head of Mechanical Engineering, a department of 67 professors that was ranked as high as 12th nationally during his tenure. Bradley has authored over 150 refereed research publications including book chapters, articles in archival journals such as the Journal of Material Science, Journal of Reinforced Plastics and Composites, Mechanics of Time-Dependent Materials, Journal of Composites Technology and Research, Composite Science and Technology, Journal of Metals, Polymer Engineering and Science, and Journal of Materials Science, and refereed conference proceedings.

Dr. Bradley has secured over $5.0 million in research funding from NSF grants (15 yrs.), AFOSR (10 years), NASA grants (10 years), and DOE (3 years). He has also received research grants or contracts from many Fortune 500 companies, including Alcoa, Dow Chemical, DuPont, 3M, Shell, Exxon, Boeing, and Phillips.

He co-authored The Mystery of Life Origin: Reassessing Current Theories and has written 10 book chapters dealing with various faith science issues, a topic on which he speaks widely.

He has received 5 research awards at Texas A&M University and 1 national research award. He has also received two teaching awards. He is an Elected Fellow of the American Society for Materials and the American Scientific Affiliation (ASA), the largest organization of Christians in Science and Technology in the world. He is President elect of the ASA and will serve his term in 2008.

You can read more about his recent research in this article from Science Daily.

Below, I analyze a lecture entitled “Is There Scientific Evidence for an Intelligent Designer?”. Dr. Bradley explains how the progress of science has made the idea of a Creator and Designer of the universe more acceptable than ever before.

The MP3 file is here.

Evidence #1: The design of the universe

1. The correspondence of natural phenomena to mathematical law

  • All observations of physical phenomena in the universe, such as throwing a ball up in the air, are described by a few simple, elegant mathematical equations.

2. The fine-tuning of physical constants and rations between constants in order to provide a life-permitting universe

  • Life has certain minimal requirements; long-term stable source of energy, a large number of different chemical elements, an element that can serve as a hub for joining together other elements into compounds, etc.
  • In order to meet these minimal requirements, the physical constants, (such as the gravitational constant), and the ratios between physical constants, need to be withing a narrow range of values in order to support the minimal requirements for life of any kind.
  • Slight changes to any of the physical constants, or to the rations between the constants, will result in a universe inhospitable to life.
  • The range of possible ranges over 70 orders of magnitude.
  • Although each individual selection of constants and ratios is as unlikely as any other selection, the vast majority of these possibilities do not support the minimal requirements of life of any kind. (In the same way as any hand of 5 cards that is dealt is as likely as any other, but you are overwhelmingly likely NOT to get a royal flush. In our case, a royal flush is a life-permitting universe).

Examples of finely-tuned constants and ratios: (there are more examples in the lecture)

a) The strong force: (the force that binds nucleons (= protons and neutrons) together in nucleus, by means of meson exchange)

  • if the strong force constant were 2% stronger, there would be no stable hydrogen, no long-lived stars, no hydrogen containing compounds. This is because the single proton in hydrogen would want to stick to something else so badly that there would be no hydrogen left!
  • if the strong force constant were 5% weaker, there would be no stable stars, few (if any) elements besides hydrogen. This is because you would be able to build up the nuclei of the heavier elements, which contain more than 1 proton.
  • So, whether you adjust the strong force up or down, you lose stars than can serve as long-term sources of stable energy, or you lose chemical diversity, which is necessary to make beings that can perform the minimal requirements of living beings. (see below)

b) The conversion of beryllium to carbon, and carbon to oxygen

  • Life requires carbon in order to serve as the hub for complex molecules, but it also requires oxygen in order to create water.
  • Carbon is like the hub wheel in a tinker toy set: you can bind other elements together to more complicated molecules (e.g. – “carbon-based life), but the bonds are not so tight that they can’t be broken down again later to make something else.
  • The carbon resonance level is determined by two constants: the strong force and electromagnetic force.
  • If you mess with these forces even slightly, you either lose the carbon or the oxygen.

3. Fine-tuning to allow a habitable planet

  • A number of factors must be fine-tuned in order to have a planet that supports life
  • Initial estimates predicted abundant life in the universe, but revised estimates now predict that life is almost certainly unique in the galaxy, and probably unique in the universe.
  • Even though there are lots of stars in the universe, the odds are against any of them supporting complex life.
  • Here are just a few of the minimal requirements for habitability: must be a single star solar system, in order to support stable planetary orbits, the planet must be the right distance from the sun in order to have liquid water at the surface, the planet must sufficient mass in order to retain an atmosphere, etc.

The best non-theistic response to this argument is to postulate a multiverse, but that is very speculative and there is no experimental evidence that supports it.

Evidence #2: The origin of the universe

1. The progress of science has shown that the entire physical universe came into being out of nothing (= “the big bang”). It also shows that the cause of this creation event is non-physical and non-temporal. The cause is supernatural.

  • Atheism prefers an eternal universe, to get around the problem of a Creator having to create the universe.
  • Discovery #1: Observations of galaxies moving away from one another confirms that the universe expanded from a single point.
  • Discovery #2: Measurements of the cosmic background radiation confirms that the universe exploding into being.
  • Discovery #3: Predictions of elemental abundances prove that the universe is not eternal.
  • Discovery #4:The atheism-friendly steady-state model and oscillating model were both falsified by the evidence.
  • And there were other discoveries as well, mentioned in the lecture.

The best non-theistic response to this argument is to postulate a hyper-universe outside of ours, but that is very speculative and there is no experimental evidence that supports it.

Evidence #3: The origin of life

1. The progress of science has shown that the simplest living organism contains huge amounts of biological information, similar to the Java code I write all day at work. This is a problem for atheists, because the sequence of instructions in a living system has to come together all at once, it cannot have evolved by mutation and selection – because there was no replication in place prior to the formation of that first living system!

  • Living systems must support certain minimum life functions: processing energy, storing information, and replicating.
  • There needs to be a certain amount of complexity in the living system that can perform these minimum functions.
  • But on atheism, the living system needs to be simple enough to form by accident in a pre-biotic soup, and in a reasonable amount of time.
  • The minimal functionality in a living system is a achieved by DNA, RNA and enzymes. DNA and RNA are composed of sequences of proteins, which are in turn composed of sequences of amino acids.

Consider the problems of building a chain of 100 amino acids

  • The amino acids must be left-handed only, but left and right kinds are equally abundant in nature. How do you sort out the right-handed ones?
  • The amino acids must be bound together using peptide bonds. How do you prevent other types of bonds?
  • Each link of the amino acid chain needs to be carefully chosen such that the completed chain with fold up into a protein. How do you choose the correct amino acid for each link from the pool of 20 different kinds found in living systems?
  • In every case, a human or other intelligence could solve these problems by doing what intelligent agents do best: making choices.
  • But who is there to make the choices on atheism?

The best current non-theistic response to this is to speculate that aliens may have seeded the Earth with life at some point in the past.

The problem of the origin of life is not a problem of chemistry, it is a problem of engineering. Every part of car functionality can be understood and described using the laws of physics and chemistry. But an intelligence is still needed in order to assemble the components into a system that has the minimal requirements for a functioning vehicle.