Tag Archives: Evolution

Yale University computer science professor takes a look at protein formation probabilities

How did life begin?
How did life begin?

When I was in graduate school, we studied a book called “Mirror Worlds”, authored by famous computer science professor David Gelernter at Yale University. This week, I noticed that Dr. Gelernter had written an article in the prestigious Claremont Review of Books. In his article, he applies his knowledge of computer science to the problem of the origin of life.

Evolution, if it is going to work at all, has to explain the problem of how the basic building blocks of life – proteins – can emerge from non-living matter. It turns out that the problem of the origin of life is essentially a problem of information – of code. If the components of proteins are ordered properly, then the sequence folds up into a protein that has biological function. If the sequence is not good, then just like computer code, it won’t run.

Here’s Dr. Gelernter to explain:

How to make proteins is our first question. Proteins are chains: linear sequences of atom-groups, each bonded to the next. A protein molecule is based on a chain of amino acids; 150 elements is a “modest-sized” chain; the average is 250. Each link is chosen, ordinarily, from one of 20 amino acids. A chain of amino acids is a polypeptide—“peptide” being the type of chemical bond that joins one amino acid to the next. But this chain is only the starting point: chemical forces among the links make parts of the chain twist themselves into helices; others straighten out, and then, sometimes, jackknife repeatedly, like a carpenter’s rule, into flat sheets. Then the whole assemblage folds itself up like a complex sheet of origami paper. And the actual 3-D shape of the resulting molecule is (as I have said) important.

Imagine a 150-element protein as a chain of 150 beads, each bead chosen from 20 varieties. But: only certain chains will work. Only certain bead combinations will form themselves into stable, useful, well-shaped proteins.

So how hard is it to build a useful, well-shaped protein? Can you throw a bunch of amino acids together and assume that you will get something good? Or must you choose each element of the chain with painstaking care? It happens to be very hard to choose the right beads.

Gelernter decides to spot the Darwinist a random sequence of 150 elements. Now the task the Darwinist is to use random mutation to arrive at a sequence of 150 links that has biological function.

[W]hat are the chances that a random 150-link sequence will create such a protein? Nonsense sequences are essentially random. Mutations are random. Make random changes to a random sequence and you get another random sequence. So, close your eyes, make 150 random choices from your 20 bead boxes and string up your beads in the order in which you chose them. What are the odds that you will come up with a useful new protein?

[…]The total count of possible 150-link chains, where each link is chosen separately from 20 amino acids, is 20150. In other words, many. 20150 roughly equals 10195, and there are only 1080 atoms in the universe.

What proportion of these many polypeptides are useful proteins? Douglas Axe did a series of experiments to estimate how many 150-long chains are capable of stable folds—of reaching the final step in the protein-creation process (the folding) and of holding their shapes long enough to be useful. (Axe is a distinguished biologist with five-star breeding: he was a graduate student at Caltech, then joined the Centre for Protein Engineering at Cambridge. The biologists whose work Meyer discusses are mainly first-rate Establishment scientists.) He estimated that, of all 150-link amino acid sequences, 1 in 1074 will be capable of folding into a stable protein. To say that your chances are 1 in 1074 is no different, in practice, from saying that they are zero. It’s not surprising that your chances of hitting a stable protein that performs some useful function, and might therefore play a part in evolution, are even smaller. Axe puts them at 1 in 1077.

In other words: immense is so big, and tiny is so small, that neo-Darwinian evolution is—so far—a dead loss. Try to mutate your way from 150 links of gibberish to a working, useful protein and you are guaranteed to fail. Try it with ten mutations, a thousand, a million—you fail. The odds bury you. It can’t be done.

Keep in mind that you need many, many proteins in order to have even a simple living cell. (And that’s not even considering the problem of organizing the proteins into a system).

So, if you’re a naturalist, then your only resources to explain the origin of life are chance and mutation. As Dr. Gelernter shows, naturalistic explanations won’t work to solve even part of the problem. Not even with a long period of time.  Not even if you use the entire universe as one big primordial soup, and keep trying sequences for the history of the universe. It just isn’t possible to arrive at sequences that have biological function in the time available, using the resources available. The only viable explanation is that there is a computer scientist who wrote the code without using trial and error. Something that ordinary software engineers like myself and Dr. Gelernter do all the time. We know what kind of cause is adequate to explain functioning code.

Nanotechnology expert Dr. James Tour assesses origin of life research

What is involved in creating life from non-life?
What is involved in creating life from non-life?

Well, a couple of weeks ago I watched lectures from a recent Science and Faith Conference that occurred at Park Cities Baptist Church in Dallas, Texas. I also sent the lectures to my STEM women advisors to get their opinions. It was unanimous that Tour’s talk on origin of life research was the best. So let’s see his bio, then we’ll take a look at his lecture.

Dr. James Tour:

James M. Tour, a synthetic organic chemist, received his Bachelor of Science degree in chemistry from Syracuse University, his Ph.D. in synthetic organic and organometallic chemistry from Purdue University, and postdoctoral training in synthetic organic chemistry at the University of Wisconsin and Stanford University.

After spending 11 years on the faculty of the Department of Chemistry and Biochemistry at the University of South Carolina, he joined the Center for Nanoscale Science and Technology at Rice University in 1999 where he is presently the T. T. and W. F. Chao Professor of Chemistry, Professor of Computer Science, and Professor of Materials Science and NanoEngineering.

Tour’s scientific research areas include nanoelectronics, graphene electronics, silicon oxide electronics, carbon nanovectors for medical applications, green carbon research for enhanced oil recovery and environmentally friendly oil and gas extraction, graphene photovoltaics, carbon supercapacitors, lithium ion batteries, CO2 capture, water splitting to H2 and O2, water purification, carbon nanotube and graphene synthetic modifications, graphene oxide, carbon composites, hydrogen storage on nanoengineered carbon scaffolds, and synthesis of single-molecule nanomachines which includes molecular motors and nanocars.

[…]Tour has over 650 research publications and over 120 patents.

As he explains in the lecture, his research has frequently been used in the private sector to solve real world problems.

His lecture:

Evolution News had a short blurb of the lecture:

Rice University chemist James Tour almost defies description in a video now up of his amazing presentation at Discovery Institute’s 2019 Dallas Conference on Science and Faith.

At one point he asks for a show of hands of fellow synthetic chemists in the (large) audience. It turns out there are a couple and he demands that they stand up and call him a liar if anything he says isn’t true. His message is an alternatively scathing and hilarious indictment of claims from the origin-of-life studies community. Dr. Tour’s work in nanotechnology, an ulta-ultra-painstaking field, provides the backdrop for his demonstration that origins scientists don’t have the slightest idea how the first life was somehow naturally synthesized by blind, mindless forces.

The field hasn’t advanced an inch in 60-plus years. “Everyone’s clueless on this but no one wants to admit it.” Great scientists writing in the highest profile science journals are “lying to you” when they assert otherwise. “Show me the chemistry” of abiogenesis, he says. “It’s not there.”

Jim Tour is without parallel. Truly, I’d love to hear from our materialist critics how they would answer any of this.

At the conference, Tour’s lecture was accompanied by other great lectures on the origin of the universe and also the Cambrian explosion by Dr. Stephen C. Meyer. Jay Richards spoke on fine-tuning and habitability. You can find the links to those lectures on the Discovery Institute YouTube channel.

What we liked about the lecture by Dr. James Tour was that he did not dumb down the content for a church audience. I was sending screen captures of his slides and short video clips to my best friend Dina while I watched it. I was very excited to see someone so accomplished in his research and entrepreneurship being honest with the laypeople in the church. And I loved the church for letting him speak like a scientist. I didn’t understand everything he was saying about the science, but I always understood the point he was trying to make.

Let this lecture encourage to raise your children to focus on science, math, engineering and technology, because you can clearly see the value that we have in Dr. James Tour. We need hundreds more scientists who go to the best schools and make a difference.

I really hope that some of the younger Christians will understand the importance of making scientific evidence for a Creator and Designer more widely known. Learn the areas of science where God’s existence can be detected, and put the time in learning how to make those arguments.

Colorado shooter hated Christians for disagreeing with homosexuality, praised Democrat Obama

Richard Dawkins on atheism, morality, free will and human rights
Richard Dawkins on atheism, morality, free will and human rights

This is just a quick post of the straight facts from the reliable Washington Times. The Washington Times reported on his views and values from his social media accounts. It turns out he’s a Democrat who attacked President Trump, praised President Obama, and posted all sorts of hateful criticism of Christians, because of the Bible’s teaching on sexuality and natural marriage.

The Washington Times reports:

Devon Erickson, 18, has been held in the attack at STEM School Highlands Ranch in which seven students were injured and one killed, reported 9News, the Denver NBC news outlet.

[…]Mr. Erickson had said on social media, according to a report in Heavy.com, that he hated Christians for their teaching on homosexuality and his accounts suggested suggested he was not a fan of President Trump.

“You know what I hate? All these Christians who hate gays, yet in the bible, it says in Deuteronomy 17:12-13, if someone doesn’t do what their priest tells them to do, they are supposed to die. It has plenty of crazy stuff like that. But all they get out of it is ‘ewwwwww gays,’” he wrote on Facebook a couple years ago.

In 2016, his account shared a video of Seth Meyers attacking President Trump, and in 2015, “he shared an Occupy Democrats post praising then President Barack Obama,” according to Heavy.

In addition, the Washington Examiner reports that one of the other suspects is a transgender male (biological female):

The second suspect in yesterday’s shooting at STEM School Highlands Ranch has been identified as a “juvenile female,” although the person is reportedly transgender.

Authorities say the shooting, which left one student dead and eight others wounded, was perpetrated by 18-year-old Devon Erickson and an unnamed minor. The ABC local affiliate has reported the minor is transgender and is transitioning from woman to man.

That’s all we know right now, but I think it’s useful for us to consider whether the majority of these shootings are committed by people on the secular left.

I can’t think of a single act of violence committed by a Bible-believing conservative, because such acts are forbidden by the Bible. But for people who don’t like the Bible, these things are natural and normal. The universe is an accident, humans evolved from slime, there is no such thing as divine-grounded human rights, there’s no free will, no life after death, no design for how we ought to be, and life is just Darwinian survival of the fittest.

So many shooters are on the secular left

I remember when that socialist support of Bernie Sanders shot up the Republicans at their softball game.

The Washington Examiner reported on that shooting:

The shooter blamed for Wednesday’s bloody attack on a Republican congressional baseball team shared a tie with the 2012 gunman who attacked the conservative Family Research Council in Washington.

Both were fans of the Southern Poverty Law Center.

James T. Hodgkinson, 66, of Illinois, liked the SPLC on his Facebook page, along with other liberal groups such as Media Matters and MoveOn.org. Since the shooting, his page has been dismantled, but Secrets saw it as did WND and Conservative Review.

[…]In the 2012 shooting at FRC that injured a security guard, convicted domestic terrorist Floyd Lee Corkins II said he targeted the group because the Southern Poverty Law Center (SPLC) identified them as a “hate group” due to their traditional marriage views.

“Southern Poverty Law lists anti-gay groups,” Corkins told interrogators in a video, which FRC obtained from the FBI. “I found them online, did a little research, went to the website, stuff like that.”

At the time, Secrets reported that Corkins, who pleaded guilty to terrorism charges, said in court that he hoped to “kill as many as possible and smear the Chick-Fil-A sandwiches in victims’ faces, and kill the guard.”

The shooting occurred after an executive with Chick-Fil-A announced his support for traditional marriage, angering same-sex marriage proponents.”

The Southern Poverty Law Center still lists FRC as an “anti-gay” hate group on the “hate map” Corkins used. “The SPLC’s reckless labeling has led to devastating consequences,” said FRC President Tony Perkins. “Because of its ‘hate group’ lists, a deadly terrorist had a guidemap to FRC and other organizations. Our staff is still reeling from the attack, and the chilling effect this could have on organizations that are simply fighting for their values is outrageous.”

And what about Devin Kelley, the Texas shooter who shot unarmed Christians in a church?

The New York Post reports:

Texas church shooter Devin Kelley was a “creepy” atheist “outcast” who never fit in and berated religious believers on social media, according to former friends and classmates.

“He was always talking about how people who believe in God we’re stupid and trying to preach his atheism,” wrote former classmate Nina Rose Nava in a Facebook post, according to the Daily Mail.

I could go on and on and on… Navy Yard shooter Aaron Alexis – Obama supporter. Discovery Channel shooter James Lee – radical environmentalist and anti-capitalist. Arizona shooter Jared Loughner – Marxist and atheist.

Do you know any progressive atheists who think that religious people are “stupid”? Who think that the Bible’s teachings on chastity and marriage are “evil”? I see them all the time in the mainstream media news channels, and on the Comedy Channel shows. There seems to be a lot of them in Hollywood, and in the Democrat Party, etc. It seems as though it’s very popular for mass murderers to think that Christians are “stupid” and their moral values are “evil”.

Update:

The male shooter is fatherless, son of an illegal immigrant with criminal convictions.