Tag Archives: Evidence

News

New study: function found for beta-globin pseudogene that was labeled “junk” during Dover trial

1 Comment

Casey Luskin tells us about a new study in Evolution News.

Excerpt:

A new paper in Genome Biology and Evolution argues that the famous beta-globin pseudogene is functional. Why is this pseudogene famous?

Well, it’s been Exhibit A — literally, offered as evidence in a court case — for critics of intelligent design who argue that our genome is full of useless, functionless junk, and therefore can’t be a product of design. Near the beginning of his testimony on the very first day of the 2005 Kitzmiller v. Dover trial, Brown University biology professor Kenneth Miller testified to the court that the beta-globin pseudogene is “broken, and it has a series of molecular errors that render the gene non-functional.” (Day 1 AM, p. 79.) He further told the court:

And the fact that all three of these species have matching mistakes leads us to just one conclusion, and that’s the same conclusion that Charles Darwin predicted almost a century and a half ago, and that is that these three species share a common ancestor. Matching mistakes are evidence of common ancestry. (Day 1 AM, p. 81)

In his 2008 book Only a Theory, Miller is even more explicit in asserting that this pseudogene refutes intelligent design. He writes that “A detailed analysis of the beta-globin pseudogene shows a series of mutations have rendered it nonfunctional” (p. 102). In Miller’s view, that takes care of ID:

The gorilla and chimpanzee pseudogenes have exactly the same set of molecular errors [in their beta-globin pseudogene] … There’s no escaping the implication of these matching mistakes, and there’s no point in arguing that six identical mistakes could have turned up independently in three unrelated species. The only sensible interpretation is that the original errors developed at random in a single common ancestor of these three species. In a court of genetic copyright law, any motion that a designer could claim originality for the human genome would be tossed out in a flash. (pp. 102-103)

Now a new paper in Genome Biology and Evolution, “Evolutionary Constraints in the β-Globin Cluster: The Signature of Purifying Selection at the δ-Globin (HBD) Locus and Its Role in Developmental Gene Regulation, argues that the beta-globin pseudogene is not broken, but in fact performs an important function in regulating gene expression.

Remember, Darwinists are still reeling from the ENCODE study that found that the non-coding DNA that they said was 100% junk was actually 80% functional. The trouble is that they are always letting their philosophy of naturalism get in the way of their science. They assume that nature is all there is. They assumed that everything is not designed. Then they are quick to say that things that aren’t junk are junk, in order to confirm their assumption. Problems occur later when good science comes along and proves their philosophical assumption of naturalism wrong. Do they then give up the philosophical assumption? Heck no – that’s their religion! But they ought to give it up if they were honest, and stick with the science instead. Too much bad religion among the Darwinists – that’s the problem.

Polemics

Does atheism mean “a lack of belief in God”?

27 Comments

First, let’s see check with the Stanford University Encyclopedia of Philosophy.

Excerpt:

‘Atheism’ means the negation of theism, the denial of the existence of God.

Stanford University is one of the top 5 universities in the United States, so that’s a solid definition. To be an atheist is to be a person who makes the claim that, as a matter of FACT, there is no intelligent agent who created the universe. Atheists think that there is no God, and theists think that there is a God. Both claims are objective claims about the way the world is out there, and so both sides must furnish forth arguments and evidence as to how they are able to know what they are each claiming.

Philosopher William Lane Craig has some thoughts on atheism, atheists and lacking belief in God in this reply to a questioner.

Question:

In my discussions with atheists, they  are using the term that they “lack belief in God”. They claim that this is different from not believing in God or from saying that God does not exist. I’m not sure how to respond to this. It seems to me that its a silly word-play and is logically the same as saying that you do not believe in God.
What would be a good response to this?
Thank you for your time,

Steven

And here is Dr. Craig’s full response:

Your atheist friends are right that there is an important logical difference between believing that there is no God and not believing that there is a God.  Compare my saying, “I believe that there is no gold on Mars” with my saying “I do not believe that there is gold on Mars.”   If I have no opinion on the matter, then I do not believe that there is gold on Mars, and I do not believe that there is no gold on Mars.  There’s a difference between saying, “I do not believe (p)” and “I believe (not-p).”   Logically where you place the negation makes a world of difference.

But where your atheist friends err is in claiming that atheism involves only not believing that there is a God rather than believing that there is no God.

There’s a history behind this.  Certain atheists in the mid-twentieth century were promoting the so-called “presumption of atheism.” At face value, this would appear to be the claim that in the absence of evidence for the existence of God, we should presume that God does not exist.  Atheism is a sort of default position, and the theist bears a special burden of proof with regard to his belief that God exists.

So understood, such an alleged presumption is clearly mistaken.  For the assertion that “There is no God” is just as much a claim to knowledge as is the assertion that “There is a God.”  Therefore, the former assertion requires justification just as the latter does.  It is the agnostic who makes no knowledge claim at all with respect to God’s existence.  He confesses that he doesn’t know whether there is a God or whether there is no God.

But when you look more closely at how protagonists of the presumption of atheism used the term “atheist,” you discover that they were defining the word in a non-standard way, synonymous with “non-theist.”  So understood the term would encompass agnostics and traditional atheists, along with those who think the question meaningless (verificationists).  As Antony Flew confesses,

the word ‘atheist’ has in the present context to be construed in an unusual way.  Nowadays it is normally taken to mean someone who explicitly denies the existence . . . of God . . . But here it has to be understood not positively but negatively, with the originally Greek prefix ‘a-’ being read in this same way in ‘atheist’ as it customarily is in . . . words as ‘amoral’ . . . . In this interpretation an atheist becomes not someone who positively asserts the non-existence of God, but someone who is simply not a theist. (A Companion to Philosophy of Religion, ed. Philip Quinn and Charles Taliaferro [Oxford:  Blackwell, 1997], s.v. “The Presumption of Atheism,” by Antony Flew)

Such a re-definition of the word “atheist” trivializes the claim of the presumption of atheism, for on this definition, atheism ceases to be a view.  It is merely a psychological state which is shared by people who hold various views or no view at all.  On this re-definition, even babies, who hold no opinion at all on the matter, count as atheists!  In fact, our cat Muff counts as an atheist on this definition, since she has (to my knowledge) no belief in God.

One would still require justification in order to know either that God exists or that He does not exist, which is the question we’re really interested in.

So why, you might wonder, would atheists be anxious to so trivialize their position?  Here I agree with you that a deceptive game is being played by many atheists.  If atheism is taken to be a view, namely the view that there is no God, then atheists must shoulder their share of the burden of proof to support this view.  But many atheists admit freely that they cannot sustain such a burden of proof.  So they try to shirk their epistemic responsibility by re-defining atheism so that it is no longer a view but just a psychological condition which as such makes no assertions.  They are really closet agnostics who want to claim the mantle of atheism without shouldering its responsibilities.

This is disingenuous and still leaves us asking, “So is there a God or not?”

So there you have it. We are interested in what both sides know and what reasons and evidence they have to justify their claim to know. We are interested in talking to people who make claims about objective reality, not about themselves, and who then go on to give reasons and evidence to support their claims about objective reality. There are atheists out there that do make an objective claim that God does not exist, and then support that claim with arguments and evidence. Those are good atheists, and we should engage in rational conversations with them. But clearly there are some atheists who are not like that. How should we deal with these “subjective atheists”?

Dealing with subjective atheists

How should theists respond to people who just want to talk about their psychological state? Well, my advice is to avoid them. They are approaching religion irrationally and non-cognitively – like the person who enters a physics class and says “I lack a belief in the gravitational force!”.  When you engage in serious discussions with people about God’s existence, you only care about what people know and what they can show to be true. We don’t care about a person’s psychology.

Dealing with persistent subjective atheists

What happens when you explain all of that to a subjective atheist who continues to insist that you listen to them repeat over and over “I lack a belief in God, I lack a belief in God”? What if you tell them to make the claim that God does not exist, and then support it with arguments and evidence, but instead they keep leaving comments on your blog telling you again and again about their subjective state of mind: “I lack a belief in cupcakes! I lack a belief in icebergs!” What if they keep e-mailing you and threatening to expose you on Twitter for refusing to listen to them, or denounce you via skywriting: “Wintery Knight won’t listen to me! I lack a belief in crickets!”. I think at this point you have to give up and stop talking to such a person.

And that’s why I moderate and filter comments on this blog. There are uneducated people out there with access to the Internet who want attention, but I am not obligated to give it to them. And neither are you. We are not obligated to listen to abusive people who don’t know what they are talking about. I do post comments from objective atheists who make factual claims about the objective world, and who support those claims with arguments and evidence. I am not obligated to post comments from people who refuse to make objective claims or who refuse to support objective claims with arguments and evidence. And I’m not obligated to engage in discussions with them, either.

UPDATE: I noticed that Reasons for God has a post up about this.

Positive arguments for Christian theism

Videos

What is intelligent design? Dr. Stephen C. Meyer explains the theory

Leave a comment

A MUST-SEE lecture based on Dr. Stephen C. Meyer’s book “Signature in the Cell“.

You can get an MP3 of the lecture here. (30 MB)

I highly recommend watching the lecture, and looking at the slides. The quality of the video and the content is first class. There is some Q&A (9 minutes) at the end of the lecture.

Topics:

  • intelligent design is concerned with measuring the information-creating capabilities of natural forces like mutation and selection
  • Darwinists think that random mutations and natural selection can explain the origin and diversification of living systems
  • Darwinian mechanisms are capable of explaining small-scale adaptive changes within types of organisms
  • but there is skepticism, even among naturalists, that Darwinian mechanisms can explain the origin of animal designs
  • even if you concede that Darwinism can account for all of the basic animal body plans, there is still the problem of life’s origin
  • can Darwinian mechanisms explain the origin of the first life? Is there a good naturalistic hypothesis to explain it?
  • there are at least two places in the history of life where new information is needed: origin of life, and Cambrian explosion
  • overview of the structure of DNA and protein synthesis (he has helpful pictures and he uses the snap lock blocks, too)
  • the DNA molecule is composed of a sequence of proteins, and the sequence is carefully selected to have biological function
  • meaningful sequences of things like computer code, English sentences, etc. require an adequate cause
  • it is very hard to arrive at a meaningful sequence of a non-trivial length by randomly picking symbols/letters
  • although any random sequence of letters is improbable, the vast majority of sequences are gibberish/non-compiling code
  • similarly, most random sequences of amino acids are lab-proven (Doug Axe’s work) to be non-functional gibberish
  • the research showing this was conducted at Cambridge University and published in the Journal of Molecular Biology
  • so, random mutation cannot explain the origin of the first living cell
  • however, even natural selection coupled with random mutation cannot explain the first living cell
  • there must already be replication in order for mutation and selection to work, so they can’t explain the first replicator
  • but the origin of life is the origin of the first replicator – there is no replication prior to the first replicator
  • the information in the first replicator cannot be explained by law, such as by chemical bonding affinities
  • the amino acids are attached like magnetic letters on a refrigerator
  • the magnetic force sticks the letters ON the fridge, but they don’t determine the specific sequence of the letters
  • if laws did determine the sequence of letters, then the sequences would be repetitive
  • the three materialist explanations – chance alone, chance and law, law alone – are not adequate to explain the effect
  • the best explanation is that an intelligent cause is responsible for the biological explanation in the first replicator
  • we know that intelligent causes can produce functional sequences of information, e.g. – English, Java code
  • the structure and design of DNA matches up nicely with the design patterns used by software engineers (like WK!)

There are some very good tips in this lecture so that you will be able to explain intelligent design to others in simple ways, using everyday household items and children’s toys to symbolize the amino acids, proteins, sugar phosphate backbones, etc.

Proteins are constructed from a sequence of amino acids:

A sequence of amino acids forming a protein
A sequence of amino acids forming a protein

Proteins sticking onto the double helix structure of DNA:

Some proteins sticking onto the sugar phosphate backbone
Some proteins sticking onto the sugar phosphate backbone

I highly, highly recommend this lecture. You will be delighted and you will learn something.

Here is an article that gives a general overview of how intelligent design challenges. If you want to read something more detailed about the material that he is covering in the lecture above related to the origin of life, there is a pretty good article here.

Related posts