Tag Archives: Dogma

News

New peer-reviewed paper in Nature falsifies Darwinian junk DNA prediction

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First, let’s see what Darwinian evolutionists say about junk DNA, before we look at what the experiments show.

Here’s biologist John Timmer to explain the orthodox Darwinian view of DNA from 2007:

Personally, I fall into the “it’s all junk” end of the spectrum. If almost all of these sequences are not conserved by evolution, and we haven’t found a function for any of them yet, it’s hard to see how the “none of it’s junk” view can be maintained. There’s also an absence of support for the intervening view, again because of a lack of evidence for actual utility. The genomes of closely related species have revealed very few genes added from non-coding DNA, and all of the structural RNA we’ve found has very specific sequence requirements. The all-junk view, in contrast, is consistent with current data.

Got that? According to Darwinists, DNA is almost entirely junk – this is what is consistent with the view that creatures have evolved through a process of random mutation and selection. The estimates that I’ve seen from evolutionary biologists range from 95% to 99% junk. Now let’s compare the religion with the lab experiments and separate myth from fact.

Now let’s compare that with intelligent design theorist William Dembski’s view of “junk” DNA, from 1998:

Even if we have a reliable criterion for detecting design, and even if that criterion tells us that biological systems are designed, it seems that determining a biological system to be designed is akin to shrugging our shoulders and saying God did it. The fear is that admitting design as an explanation will stifle scientific inquiry, that scientists will stop investigating difficult problems because they have a sufficient explanation already.

But design is not a science stopper. Indeed, design can foster inquiry where traditional evolutionary approaches obstruct it. Consider the term “junk DNA.” Implicit in this term is the view that because the genome of an organism has been cobbled together through a long, undirected evolutionary process, the genome is a patchwork of which only limited portions are essential to the organism. Thus on an evolutionary view we expect a lot of useless DNA. If, on the other hand, organisms are designed, we expect DNA, as much as possible, to exhibit function. And indeed, the most recent findings suggest that designating DNA as “junk” merely cloaks our current lack of knowledge about function… Design encourages scientists to look for function where evolution discourages it.

Now let’s look at the experimental evidence and see whose prediction was right.

Evolution News reports on a new peer-reviewed paper published in Nature, the top peer-reviewed science journal. (H/T ECM)

Excerpt:

A groundbreaking paper in Nature reports the results of the Encyclopedia of DNA Elements (ENCODE) project, which has detected evidence of function for the “vast majority” of the human genome. Titled “An integrated encyclopedia of DNA elements in the human genome,” the paper finds an “unprecedented number of functional elements,” where “a surprisingly large amount of the human genome” appears functional. Based upon current knowledge, the paper concludes that at least 80% of the human genome is now known to be functional:

The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions. Many discovered candidate regulatory elements are physically associated with one another and with expressed genes, providing new insights into the mechanisms of gene regulation.

(The ENCODE Project Consortium, “An integrated encyclopedia of DNA elements in the human genome,” Nature, Vol. 489:57-74 (September 6, 2012) (emphasis added))

If you doubt Evolution News, we can always turn the ultra-leftist Los Angeles Times, reporting on the same study. (H/T Wes from Reason to Stand)

Excerpt:

The $123-million effort involved more than 400 scientists and more than 1,600 experiments during five years of work. If presented graphically, the data generated so far would cover a poster 30 kilometers wide and 16 meters high, Birney has estimated.

This is still just a start — akin to “grainy images beamed back to Earth by the first satellite,” said Dr. Eric Green, director of the National Human Genome Research Institute, which funded ENCODE. But already, it’s throwing up surprises.

Strikingly, the data overturn old ideas that the bulk of DNA in our cells is useless — albeit inoffensive — junk just carried along for the evolutionary ride. Back in 2003 when the human genome was published, scientists estimated that less than 2% of it carries instructions for making proteins, and many of them thought the rest didn’t do very much.

But the new analysis shows that more than 80% of the human genome is active in at least one biological process that the ENCODE team measured. Nearly every part of it could end up being active when the data are more complete.

Here’s the ultra-left-wing New York Times, confirming the statement I made earlier about the dogma of the Darwinians:

The discoveries were published on Wednesday in six papers in the journal Nature and in 24 papers in Genome Research and Genome Biology. In addition, The Journal of Biological Chemistry is publishing six review articles, and Science is publishing yet another article.

[…]The thought before the start of the project, said Thomas Gingeras, an Encode researcher from Cold Spring Harbor Laboratory, was that only 5 to 10 percent of the DNA in a human being was actually being used.

The big surprise was not only that almost all of the DNA is used but also that a large proportion of it is gene switches. Before Encode, said Dr. John Stamatoyannopoulos, a University of Washington scientist who was part of the project, “if you had said half of the genome and probably more has instructions for turning genes on and off, I don’t think people would have believed you.”

It’s just another prediction of Darwinian orthodoxy falsified by experimental evidence published in the top scientific peer-reviewed journal. Will this cause Darwinians to revise their theory to fit the evidence? Not likely. Their motivations for clinging to naturalism, the religion that undergirds Darwinism, are entirely beyond correction by evidence.

I wonder what people like P.Z. Myers and Larry Moran do when their religion comes into conflict with scientific evidence from lab experiments? Do they bitterly cling to their mythology from the 19th century? Or do they adjust their worldview to be in line with the progress of science?

Let Richard Dawkins explain evolution and the role of evidence:

“My argument will be that Darwinism is the only known theory that is in principle capable of explaining certain aspects of life. If I am right it means that, even if there were no actual evidence in favour of the Darwinian theory (there is, of course) we should still be justified in preferring it over all rival theories.” — p. 287, Blind Watchmaker” (1986)

Or Richard Lewontin:

“Our willingness to accept [naturalistic]  scientific claims that are against common sense is the key to an understanding of the real struggle between science and the supernatural. We take the side of science in spite of the patent absurdity of some of its constructs, in spite of its failure to fulfill many of its extravagant promises of health and life, in spite of the tolerance of the scientific community for unsubstantiated just-so stories, because we have a prior commitment, a commitment to materialism. It is not that the methods and institutions of science somehow compel us to accept a material explanation of the phenomenal world but, on the contrary, that we are forced by our own a priori adherence to material causes to create an apparatus of investigation and a set of concepts that produce material explanations, not matter how counterintuitive, no matter how mystifying to the uninitiated. Moreover, that materialism is absolute, for we cannot allow a divine foot in the door.” (Richard Lewontin in New York Review of Books, January 9, 1997, p. 28)

Junk DNA isn’t the only battle in the long war between atheism and scientific evidence. Naturalists fought the Big Bang tooth and nail, trying to save their eternal universe from the progress of science. Naturalists invented the now discredited oscillating model of the universe in order to “explain” the evidence for a cosmic beginning. Naturalists invented the unobservable, untestable multiverse to “explain” the cosmic fine-tuning. Aliens are posited in order to “explain” the origin of life. Precursor fossils are invented without evidence in order to “explain” the Cambrian era explosion in complexity. And so on.

Evidence doesn’t matter to people who are motivated by naturalistic faith. Like belief in a flat-Earth, the delusion of naturalism is not accountable to scientific evidence. They believe what they want to believe. It’s not up for debate. For some people like Richard Dawkins, a prior lifestyle commitment makes theism (and the moral law!) an impossibility a priori. But rational people know that believing something just so that your actions are “justified” doesn’t make what you believe true.

For the intelligent design take on junk DNA, check out this article. To see who was right about predicting whether “vestigial organs” like the appendix have function, check out this post. You can find more predictions that follow from intelligent design right here.

Polemics

Can a materialist question Darwinism without having his career ruined?

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From Uncommon Descent, the abstract of a paper by Alex Rosenberg, warning even materialists not to question Darwinism.

Excerpt:

Abstract

There is only one physically possible process that builds and operates purposive systems in nature: natural selection. What it does is build and operate systems that look to us purposive, goal directed, teleological. There really are not any purposes in nature and no purposive processes ether. It is just one vast network of linked causal chains. Darwinian natural selection is the only process that could produce the appearance of purpose. That is why natural selection must have built and must continually shape the intentional causes of purposive behavior. Fodor’s argument against Darwinian theory involves a biologist’s modus tollens which is a cognitive scientist’s modus ponens. Assuming his argument is valid, the right conclusion is not that Darwin’s theory is mistaken but that Fodor’s and any other non-Darwinian approaches to the mind are wrong. It shows how getting things wrong in the philosophy of biology leads to mistaken conclusions with the potential to damage the acceptance of a theory with harmful consequences for human well-being. Fodor has shown that the real consequence of rejecting a Darwinian approach to the mind is to reject a Darwinian theory of phylogenetic evolution. This forces us to take seriously a notion that otherwise would not have much of a chance: that when it comes to the nature of mental states, indeterminacy rules. This is an insight that should have the most beneficial impact on freeing cognitive neuroscience from demands on the adequacy of its theories that it could never meet.

This might have been written by a Catholic Inquisitor at the height of the Spanish Inquisition. “Don’t demand that our theory be empirically adequate, or you’ll be sorry”. We have only to look at the stories documented in the movie “Expelled” to see how sorry. You can watch it on Youtube here, in full.

And more from a later post by Casey Luskin, on Uncommon Descent.

Excerpt:

the true purpose of Rosenberg’s piece is to warn people not to challenge Darwin or they’ll suffer the same castigation as Darwin-critic (and atheist) Jerry Fodor. Rosenberg writes: “When a philosopher advances a purely a priori argument to show that a well-established scientific theory is fatally defective, it is usually safe to assume that the problem is the philosopher’s and not the theory’s.” Translation: If you question Darwin, expect trouble–and the trouble will come from me and other defenders of Darwinism. Given the logic we see being used to defend Darwinian theory, perhaps the philosopher isn’t the problem after all.

And of course, a major part of Rosenberg’s warning is to claim that Fodor’s arguments against Darwinism lead to “damage with harmful consequences for human well being.” And just what is that damage? Well, as Rosenberg puts it, it is lending support for religion (though he can’t bring himself to put it that nicely).

[ … ]In any case, this tarring and feathering of Fodor is just the latest frustrated attempt by hardline Darwinians to discourage people from using design terminology. It’s a hopeless effort, because try as they might to impose speech codes on each another, they can’t change the fact that nature is infused with purpose, which readily lends itself to, as Rosenberg calls it “teleosemantics.”

And finally, a word from the master of Darwinish debate-avoidance, Richard Dawkins:

“My argument will be that Darwinism is the only known theory that is in principle capable of explaining certain aspects of life. If I am right it means that, even if there were no actual evidence in favour of the Darwinian theory (there is, of course) we should still be justified in preferring it over all rival theories.” — p. 287, Blind Watchmaker” (1986)

Again, these are the words of a fundamentalist. You better agree with his theory, whether the evidence is for it or not.

Here is Richard Dawkins in a video clip explaining that even if life were designed, then he knows without any evidence that aliens who evolved by Darwinian processes are the ones who did the designing:

How does he know that the aliens evolved without being able to see their fossil record and run experiments on their genetic coding? Because when it comes to Darwinism, no evidence is needed. And if you don’t buy into his little religion, then he’ll “destroy” you. And he doesn’t mean destroy you by debating, because we know that the coward refuses to debate his religion in public.

And what about Darwinist Richard Lewontin: (and by “science” he means “naturalistic science”)

“Our willingness to accept [naturalistic]  scientific claims that are against common sense is the key to an understanding of the real struggle between science and the supernatural. We take the side of science in spite of the patent absurdity of some of its constructs, in spite of its failure to fulfill many of its extravagant promises of health and life, in spite of the tolerance of the scientific community for unsubstantiated just-so stories, because we have a prior commitment, a commitment to materialism. It is not that the methods and institutions of science somehow compel us to accept a material explanation of the phenomenal world but, on the contrary, that we are forced by our own a priori adherence to material causes to create an apparatus of investigation and a set of concepts that produce material explanations, not matter how counterintuitive, no matter how mystifying to the uninitiated. Moreover, that materialism is absolute, for we cannot allow a divine foot in the door.” (Richard Lewontin in New York Review of Books, January 9, 1997, p. 28)

This is what Darwinism really amounts to: a faith commitment. A fundamentalist faith commitment, that allows no dissent. It is absolute.

Darwinism beyond the level of simple micro-evolution has never been observed or tested experimentally. And what’s more – the proponents of Darwinism do not want their theory to be subjected to criticism or testing. It fulfills a religious purpose, and therefore they are very concerned that it not be taken away from them. They are fighting against having to care what God thinks, and they will strangle any good experimental science that shows that their religion is wrong. You can see the same fundamentalism at work in the atheistic war against the experimental science that confirms the Big Bang theory, which describes the origin of the universe out of nothing.

News

Dr. Ben Carson faces the Darwinian Inquisition at Emory University

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Evolution News writes about an eminent scientist who is under by professors and students at Emory University because of his disagreement with Darwinian orthodoxy and his assertion that morality isn’t possible on a materialistic worldview.

Here’s the first article from Evolution News, which explains what got Dr. Carson in trouble with the Darwoids.

Excerpt:

You can be a brilliant, innovative pediatric neurosurgeon at a sky-scraping top medical school, in addition to being a generous philanthropist with an inspirational up-from-dire-poverty personal story, plus a Presidential Medal of Freedom winner, and a best-selling writer whose memoir was turned into a TV movie starring Cuba Gooding Jr.

All that, but if you once shared your critical thoughts on evolutionary science and its moral implications — everything else about you suddenly dwindles to very little.

Dr. Ben Carson of Johns Hopkins University is that man. He’s scheduled to give the Commencement address and receive an honorary degree at Emory University but close to 500 faculty members, students and staff protested, drawing up a gravely serious letter to the student paper expressing their “concerns.” Over what? Carson had no intention of speaking about evolution but someone dug up an impromptu interview he once gave to a publication associated with his Christian denomination (he’s a Seventh Day Adventist).

Carson explained why he’s not impressed by the evidence on offer for Darwinian theory and why a materialist philosophy is at odds with the idea of free will and therefore makes it tough to offer a coherent account of moral principles. The interview is casual in tone and it’s not clear whether his views are more along the lines of theistic evolution, intelligent design, or some other perspective. Not that the protestors seemed inclined to make any careful distinctions.

Emory isn’t withdrawing the invitation and the letter’s signatories don’t demand that the university do so. But they do distort his opinions and make him sound far less thoughtful than he actually is. Because he says you can’t, under materialism, give a sound rationale for morality, they claim he said that evolutionists are therefore morally defective, which is of course absurd.

At the First Things website, Princeton University moral philosopher Robbie George comes to Carson’s defense. Professor George agrees with Carson:

But of course Gentle Ben (and he is indeed one of the gentlest, kindest people one could ever meet) doesn’t believe that his Darwinist friends and colleagues are necessarily unethical. What he believes is that Darwinism is necessarily materialistic. (This is a view about Darwinism that he shares with some devout Darwinists themselves.) And he believes that materialism, if true, is incompatible with free will and with ethical norms (which must be, after all, norms for the guidance of free choices, if they are to have any standing, force, and validity at all). Now, he knows perfectly well that people who believe in materialism are in many cases decent, honorable, ethical people. But he thinks that they lead lives that are much better than their formal philosophical beliefs would require them to lead. He believes that their commitment to materialism makes it impossible for them to give a sound account of the ethical norms which they themselves, to their credit, live by. Of course, he might be wrong about that (though I don’t think he is), just as he might be wrong about the validity of Darwinism as a scientific theory, or the compatility of Darwinism with the rejection of materialism. But it’s certainly not a mean or crazy thing to believe or say. It’s scarcely a cause for “concern” about having him as a Commencement speaker.

Robbie George is one of the best moral philosophers out there. If he says that morality is not rationally grounded on a materialist worldview, then that’s the way it is. Naturally, people who believe in Darwinism can behave morally, because they are made in God’s image. Therefore, they have free will and an awareness of the moral law, even though these things are not rationally grounded on materialism. The point that theists make is merely that materialists are not able to make sense of morality on a deterministic worldview. They can, however, act better than their worldview allows – but it’s not rational for them to do that.

I note that Emory University is on the list of LEAST-FREE universities, according to the non-partisan, non-religious Foundational for Individual Rights in Education (FIRE), so it’s not surprising that they would be censor anyone who has different views than they do.

Here’s another article from Evolution News.

Excerpt:

Almost 500 Emory faculty and students have expressed their dismay that their commencement speaker on May 14 does not toe the ideological line on evolutionary biology. Yes, gasp, the renowned Johns Hopkins neurosurgeon Ben Carson does not believe in evolutionary theory. Not only that, but biology professors at Emory and their supporters also accuse Carson of committing a thought crime because he allegedly “equates acceptance of evolution with a lack of ethics and morality.”

Since I am a historian who has studied and published on the history of evolutionary ethics, I was rather surprised by the Emory faculty’s consternation over Carson’s belief that evolution undermines objective ethics and morality. Last summer I attended a major interdisciplinary conference at Oxford University on “The Evolution of Morality and the Morality of Evolution.” So I am well aware that there are a variety of viewpoints in academe on this topic. Nonetheless, many evolutionists — from Darwin to the present (including quite a few at that Oxford conference) — have argued and are still arguing precisely the point that Dr. Carson highlighted: they claim that morality has evolved and thus has no objective existence.

One of the keynote speakers at the Oxford conference was a leading philosopher of science, Michael Ruse, who stated in a 1985 article co-authored with Harvard biologist E. O. Wilson: “Ethics as we understand it is an illusion fobbed off on us by our genes to get us to co-operate.” Why do biologists at Emory try to make Carson appear foolish for asserting that evolution undermines ethics, while one of the leading evolutionary biologists and one of the leading philosophers of science admit that evolution destroys any objective morality? Wilson in his book Consilience (1998) argued: “Either ethical precepts, such as justice and human rights, are independent of human experience or else they are human inventions.” He rejected the former explanation, which he called transcendentalist ethics, in favor of the latter, which he named empiricist ethics.

Atheists who think about these issues agree – on a materialist interpretation of nature, ethics is arbitrary, made-up nonsense.

Even atheists like Richard Dawkins think so:

The total amount of suffering per year in the natural world is beyond all decent contemplation. During the minute that it takes me to compose this sentence, thousands of animals are being eaten alive, many others are running for their lives, whimpering with fear, others are slowly being devoured from within by rasping parasites, thousands of all kinds are dying of starvation, thirst, and disease. It must be so. If there ever is a time of plenty, this very fact will automatically lead to an increase in the population until the natural state of starvation and misery is restored. In a universe of electrons and selfish genes, blind physical forces and genetic replication, some people are going to get hurt, other people are going to get lucky, and you won’t find any rhyme or reason in it, nor any justice. The universe that we observe has precisely the properties we should expect if there is, at bottom, no design, no purpose, no evil, no good, nothing but pitiless indifference.

(“God’s Utility Function,” Scientific American, November, 1995, p. 85)

Surprise! Atheism, which assumes that matter is all there is, implies the complete destruction of rationally grounded morality – including moral standards and human rights. This is denied by no one who has thought about this problem for more than 5 seconds. If you are talking to an atheist, you are talking to someone who thinks that any statement about right and wrong is as true as it’s opposite. On atheism, the morality of rape or slavery is as arbitrary as fashion or food. Any statement that rape is wrong has as much reason behind it, on atheism, as the statement that rape is right. Any statement that slavery is wrong has as much reason behind it, on atheism, as the statement that slavery is right. And that’s what atheists mean by morality, on their view. It’s just like picking which side of the road that people will drive on in different groups of people in different places in different times. That’s “atheist morality”. And when they die, there is no accountability in the afterlife for anything they’ve done and managed to escape judgment for in this life.

And, in point of fact, you can see it right now in the way that they are treating Dr. Carson.

What to do about it

If you are not happy with the actions of the Darwish Inquisition at Emory University, then please  sign the petition!

And any atheists who are reading this post and don’t support Carson’s right to speak, please understand why theists have the opinion that atheism is nothing more than the practice of running from debates and silencing (one way or another) anyone who disagrees with you. That’s our experience of dealing with secular humanists like Richard Dawkins – no debates, just insults and coercion. To us, secular humanism is just a phrase that means totalitarianism and censorship. That’s our experience.

If you disagree, then sign the petition and prove us wrong.

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