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News

Is the “RNA world” hypothesis a good naturalistic explanation for the origin of life?

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A very good book on science apologetics was published recently, called “The Comprehensive Guide to Science and Faith: Exploring the Ultimate Questions About Life and the Cosmos“. Well, there’s an ongoing series of posts about the book at Evolution News, and one of them caught my eye. They are talking about the origin of life, and what’s needed to create life from non-life.

Here is the post from Evolution News.

The article starts by explaining the what is required to show how non-living components could be organized into a living system:

  • plausible biochemical paths from individual bio-building blocks like amino acids or nucleic acids to functional polymers such as proteins and DNA.
  • ways to speed up chemical reactions that are naturally slow.
  • the ordering of amino acids in proteins and nucleotide bases in RNA and DNA that allows them to function properly.

The leading naturalistic explanation to solve these problems is called the “RNA world” hypothesis:

The most popular proposal for the first self-replicating molecule is RNA — where life was first based upon RNA carrying both genetic information (akin to modern DNA) and performing catalytic functions (akin to modern enyzmes), in what is termed the RNA world.

The article lists several problems with the RNA world hypothesis. Dr. Walter Bradley lists two of those problems.

First, the assembly of RNA requires intelligent design:

First, RNA has not been shown to assemble in a laboratory without the help of a skilled chemist intelligently guiding the process. Origin-of-life theorist Steven Benner explained that a major obstacle to the natural production of RNA is that “RNA requires water to function, but RNA cannot emerge in water, and does not persist in water without repair” due to water’s “rapid and irreversible” corrosive effects upon RNA.3 In this “water paradox,” Benner explains that “life seems to need a substance (water) that is inherently toxic to polymers (e.g., RNA) necessary for life.”4

To overcome such difficulties, Benner and other chemists carefully designed experimental conditions that are favorable to the production of RNA. But Robert Shapiro explains that these experiments do not simulate natural conditions: “The flaw is in the logic — that this experimental control by researchers in a modern laboratory could have been available on the early Earth.”5 Reviewing attempts to construct RNA in the lab, James Tour likewise found that “[t]he conditions they used were cleverly selected,” but in the natural world, “the controlled conditions required to generate” RNA are “painfully improbable.”6 Origin-of-life theorists Michael Robertson and Gerald Joyce even called the natural origin of RNA a “Prebiotic Chemist’s Nightmare” because of “the intractable mixtures that are obtained in experiments designed to simulate the chemistry of the primitive Earth.”7 In the end, these experiments demonstrate one thing: RNA can only form by intelligent design.

The second problem is that the RNA world hypothesis is that it requires the existence of a self-replicating RNA molecule in order to get started. But this self-replicator contains a lot of biological information that is beyond the reach of chance to produce:

The most fundamental problem with the RNA world hypothesis is its inability to explain the origin of information in the first self-replicating RNA molecule — which experts suggest would have had to be at least 100 nucleotides long, if not between 200 and 300 nucleotides in length.10 How did the nucleotide bases in RNA become properly ordered to produce life? There are no known chemical or physical laws that can do this. To explain the ordering of nucleotides in the first self-replicating RNA molecule, origin-of-life theorists have no explanation other than blind chance. As noted, ID theorists call this obstacle the information sequence problem, but multiple mainstream theorists have also observed the great unlikelihood of naturally producing a precise RNA sequence required for replication.

Whenever I sit down to write some code or to write a blog post, I can start with one letter, then add another, then add another, until I have a functioning program, or a legible blog post. It might be possible for random chance to make a meaningful word out of 3 letters, like “the” or “hat”. But it’s not possible to make a self-replicating RNA molecule that way. The required sequence is just too long, and every letter has to be just right in order for it to function as a self-replicating system. The simplest self-replicating molecule is extremely complicated.

Anyway, check out the article, and if you want to read all about Walter Bradley (my role model), there is a new book out about him called “For a Greater Purpose: The Life and Legacy of Walter Bradley” which I finished, and it was great.

News

Are the Galapagos finch beaks evidence of Darwinian evolution?

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Were you taught in biology class that the changing lengths of finch beaks was a good proof of Darwinian evolution? Many students were… but is it true?

Jonathan Wells has an article about it at Evolution News.

It says:

When Charles Darwin visited the Galápagos Islands in 1835, he collected specimens of the local wildlife. These included some finches that he threw into bags, many of them mislabeled. Although the Galápagos finches had little impact on Darwin’s thinking (he doesn’t even mention them in The Origin of Species), biologists who studied them a century later called them “Darwin’s finches” and invented the myth that Darwin had correlated differences in the finches’ beaks with different food sources (he hadn’t). According to the myth, Darwin was inspired by the finches to formulate his theory of evolution, thoughaccording to historian of science Frank Sulloway “nothing could be further from the truth.”

In the 1970s, biologists studied a population of medium ground finches on one of the islands in great detail. When a severe drought left only large, hard-to-crack seeds, 85 percent of the birds perished. The survivors had beaks that were about 5 percent larger than the average beak size in the original population. The biologists estimated that if similar droughts occurred once every ten years, the population could become a new species in only 200 years. In a 1999 booklet defending evolution, the U.S. National Academy of Sciences called the finches “a particularly compelling example” of the origin of species.

But after the drought, birds with smaller beaks flourished again, and the average beak size of the population returned to normal. No net evolution had occurred. No matter; Darwin’s finches became an icon of evolution that is still featured in most biology textbooks.

In the 1980s, a population of large ground finches, with larger beaks than the medium ground finches, migrated to the island. When a drought in 2004-2005 again reduced the food supply, the medium and large ground finch populations both declined. But since even the largest beaks among the medium ground finches were no match for the beaks of the large ground finches, the latter pretty much monopolized the larger seeds and the former had to make do with smaller seeds. This time, the medium ground finches that survived the drought had beaks that were smaller than the average size in the original population. Biologists studying the finches argued that birds with smaller beaks were better able to eat the tiny seeds that were left after the large ground finches ate the big ones, and they concluded that this was again an example of “evolutionary change.”

[…]Wait a minute. Average beak size increased slightly during one drought, only to return to normal after the rains return. Then average beak size decreased slightly during another drought. A region of DNA is correlated with beak size. And somehow that tells us how finches evolved in the first place?

There is an important distinction to make between micro-evolution and macro-evolution. Changes within a type is micro-evolution. Evolving a new organ type or body plan is macro-evolution. There is plenty of evidence for micro-evolution, but no evidence for macro-evolution.

What needs to be proven by the Darwinists is that the same process that results in different average beak size in a population of finches after a drought can create the finches in the first place. I think that Darwinists are credulous – they believe what they want to believe because they want to believe it, even if the evidence is incredibly weak. Darwinists must demonstrate that heritable variations can result in the generation of new organ types and body plans. Changes in average beak size is not interesting. What is needed is to show how the beaks, much less the wings, evolved in the first place.

Icons of Evolution

Jonathan has actually written about a number of  misleading things that you may mind in Biology textbooks.

Here are the sections in his book “Icons of Evolution“:

  • The Miller-Urey Experiment
  • Darwin’s Tree of Life
  • Homology in Vertebrate Limbs
  • Haeckel’s Embroys
  • Archaeopteryx–The Missing Link
  • Peppered Moths
  • Darwin’s Finches
  • Four-Winged Fruit Flies
  • Fossil Horses and Directed Evolution
  • From Ape to Human: The Ultimate Icon

Dr. Wells holds a Ph.D in Molecular and Cell Biology from the University of California at Berkeley.

News

What’s the best explanation for the origin of life for atheists?

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I just ordered the newest edition of “The Mystery of Life’s Origin“, which is a classic book on the origin of life by pro-design authors. The new edition has several new chapters. It reminded me of my interest in the origin of life when I was a younger man, just starting full-time work with a hot Internet start-up in the big city.

Back then, I liked to listen to debates about the origin of life (e.g. – Walter Bradley versus Robert Shapiro, etc.), as well as lectures and interviews. I ordered tons of academic lectures and debates, especially from Access Research Network. Two of my favorite interviews from ARN featured Dr. Charles Thaxton and Dr. Dean Kenyon.

Let’s start with Charles Thaxton’s interview.

And here are the questions:

1. How did you first get interested in the origin of life?
2. How did you come to write The Mystery of Life’s Origin with Walter Bradley and Roger Olsen?
3. Was there an advantage to having the three of you collaborate on the project?
4. What is the primary argument of your book, The Mystery of Life’s Origin?
5. Have scientists come close to developing a plausible naturalistic explanation to the origin of life or do you still consider the origin of life to be a mystery?
6. Do you see a particular irony in the timing of Stanley Miller’s experiments and the discovery of DNA by Watson and Crick?
7. How does the emergence of modern genetics tie in with the Darwinian scenario of life going from simple to complex?
8. What are the major problems with origin of life simulation experiments?
9. Isn’t it rather impressive that amino acids were produced in the Miller experiments?
10. How close is the development of amino acids to the threshold of life?
11. What are the steps involved in producing proteins from amino acids?
12. Why are amino acids isolated during this process?
13. How can the investigator affect the outcome of a simulation experiment?
14. How did you evaluate the different chemical evolution experiments?
15. Are the initial conditions in the simulation experiments plausible?
16. What did the earth’s early atmosphere contain?
17. Will the simulation experiments work with this atmosphere?
18. There seems to be an underlying assumption that the origin of life resulted without any intelligent input whatsoever yet the simulation experiments appear to rely upon intelligent guidance. Could you comment on this irony?
19. Are there any natural processes that would have filtered out destructive ultraviolet light?
20. What additional steps beyond creating amino acids would be required to develop life?
21. What is so difficult about making proteins or nucleic acids?
22. In addition to the energy problem in protein synthesis isn’t there a sequencing problem?
23. Are DNA sequences analogous to a written language?
24. Has Hubert Yockey made similar claims?
25. In The Mystery of Life’s Origin you refer to order, randomness, and specified complexity. Could you give us an overview of these concepts?
26. What do you think the presence of specified complexity in a living system indicates about its origin?
27. In inferring the necessity of intelligence to produce life haven’t you ventured from the realm of science to religion?
28. Could you summarize the reasons why you believe intelligence was involved in the origin of life?
29. What are the major objections to your current point of view?
30. How was The Mystery of Life’s Origin received by the scientific community?
31. What was Dean Kenyon’s response to your critiques of his book, Biochemical Predestination?
32. What was Dean Kenyon’s response to The Mystery of Life’s Origin?
33. Were you a bit apprehensive about meeting Kenyon after writing a book which was quite critical of his views in Biochemical Predestination?
34. Are self-organizational theories plausible?
35. Would you comment on the work done by Prigogine and Eigen?
36. What is your assessment of RNA scenarios?
37. What other problems do you see with an RNA world?

You can learn more about Charles Thaxton here.

And here’s the interview with Dean Kenyon:

And here are the questions:

1. What first interested you in biology and the origin of life? What is your academic background in this area?
2. What was your viewpoint on the origin of life when you wrote Biochemical Predestination?
3. How have your views on the origin of life changed since you wrote Biochemical Predestination?
4. Do many of your colleagues support your new position? If not, why not?
5. What are the general presuppositions that scientists make who study the origin of life?
6. What is the Oparin-Haldane hypothesis, and what role does it play in current research and teaching on the origin of life?
7. What are the major underlying assumptions of the Oparin (chemical evolution) hypothesis?
8. Are there any other important assumptions in origin of life theories?
9. How well are these assumptions supported by currently available scientific data?
10. What is your evaluation of the Miller type of simulation experiment? What do these experiments tell us about possible chemical events on the prebiotic Earth?
11. Is it possible that interfering cross-reactions might prevent life from arising naturalistically?
12. Stanley Miller’s pioneering work in the origin of life assumed a reducing atmosphere of methane, ammonia, water vapor, and carbon dioxide? Is there sufficient empirical support for this assumption?
15. How large a gap is there between the most complex “protocell” model and the simplest living cell?
16. What is the biologically relevant information content of the simplest living organism known to exist? What are estimates for a theoretical minimum information content of the first living cell?
17. How probable is it that such complexity could arise by undirected chemical processes?
19. What are the major unsolved problems in research on the origin of life?
20. What is the relevance of the Second Law of Thermodynamics to the origin of life?
21. Is it plausible that an “RNA world” was the precursor of the first living cells?
25. If life did not originate by chemical evolution on the primitive Earth, what other possible scientific explanations exist?
26. What do you mean by your statement that “perhaps scientism is more widespread than we like to think”?
27. Is it possible that natural processes are insufficient to account for the origin of all biological information?
28. Can science rule out the possibility that most biological information had an intelligent cause?
29. What alternatives are there to pursuing purely naturalistic explanations for the origin of life?
30. What do you mean by “intelligent design” as it relates to the origin of life?
31. Why is an intelligent design or creationist interpretation of scientific data bearing on origins not acceptable to many scientists?
32. What criteria could be used to determine if the information content of living organisms had an intelligent or natural cause?
34. Does academic freedom allow you to discuss the difficulties of scientific naturalism and origin of life theories? If not, why are they protected from criticism?
35. How should the origin of life be taught in light of the California Science Framework policy which states that “nothing in science or in any other field of knowledge shall be taught dogmatically”?
36. How is scientific progress impacted when critiques of current theories are suppressed?

You can learn more about Dean Kenyon here.

The challenge for naturalists posed by the origin of life makes it well worth your time to learn and understand. I used to explain this argument to my entire IT department on white boards when I was a young man. It’s fascinating, and more convincing than personal testimonies or abstract philosophical arguments. Although I read books on the origin of life, I learned how to present the information as an argument by watching the interviews above over and over.

People sometimes ask me how I was able to survive 22 years in IT with my theism intact. It turns out that there are no shortcuts to a theistic worldview. You have to support it with evidence. You have to be able to show your work about how you reached your conclusions. I’m a theist today because I never found a single atheist in any software development job who could even begin to challenge the evidence that I collected from listening to all those lectures and debates that I started from in my early 20s. It was as easy to defeat them as taking candy from a baby.

If only Christian parents and Christian leaders understood the importance of scientific facts when they talk to young people about Christianity. We need to be less worried about hurting the feelings of young people by making them “feel dumb”. Christianity isn’t supposed to be easy. It’s not a bad thing to ask people to work hard at learning how to rationally ground it with evidence. If we want to stop our young people from being lazy, ignorant and cowardly, then the right way to do it is to make them work. Make them learn. Make them fight.