Tag Archives: Origin of Life

Was early Earth’s atmosphere suitable for creating the building blocks of life?

Do the Miller-Urey experiments simulate the early Earth?
The Miller-Urey experiments

Biochemist Dr. Fazale Rana of Reasons to Believe offers some evidence.

Excerpt:

Today, the Miller-Urey experiment is considered to be irrelevant to the origin-of-life question. Current understanding of the composition of early Earth’s atmosphere differs significantly from the gas mix used by Miller. Most planetary scientists now think that the Earth’s primeval atmosphere consisted of carbon dioxide, nitrogen, and water vapor. Laboratory experiments indicate that this gas mixture is incapable of yielding organic materials in Miller-Urey-type experiments.

In May 2003 origin-of-life researchers Jeffrey Bada and Antonio Lazcano, long-time associates of Miller, wrote an essay for Science (May 2, 2003, pp. 745-746)commemorating the 50-year anniversary of the publication of Miller’s initial results.They pointed out that the Miller-Urey experiment has historical significance, but not scientific importance in contemporary origin-of-life thought. Bada and Lazcano wrote:

Is the “prebiotic soup” theory a reasonable explanation for the emergence of life? Contemporary geoscientists tend to doubt that the primitive atmosphere had the highly reducing composition used by Miller in 1953.

In his book Biogenesis, origin-of-life researcher Noam Lahav passes similar judgment:

The prebiotic conditions assumed by Miller and Urey were essentially those of a reducing atmosphere. Under slightly reducing conditions, the Miller-Urey reaction does not produce amino acids, nor does it produce the chemicals that may serve as the predecessors of other important biopolymer building blocks. Thus, by challenging the assumption of a reducing atmosphere, we challenge the very existence of the “prebiotic soup”, with its richness of biologically important organic compounds.

For many people, the generation of amino acids from simple chemical compounds thought to be present in early Earth’s atmosphere meant that life could originate all on its own without the need for a Creator. Work done on the early planetary conditions of Earth in the intervening decades between Miller’s famous experiment and his death, however, have invalidated this famous experiment and its support for an evolutionary explanation for life’s origin, in spite of what textbooks report.

The IDEA Center has a nice summary of origin-of-life research that explains why scientists no longer accept the idea that the building blocks of life can be formed by sparking the gasses that were present on the early Earth.

Miler and Urey used the wrong gasses:

Miller’s experiment requires a reducing methane and ammonia atmosphere, however geochemical evidence says the atmosphere was hydrogen, water, and carbon dioxide (non-reducing). The only amino acid produced in a such an atmosphere is glycine (and only when the hydrogen content is unreasonably high), and could not form the necessary building blocks of life.

Miller and Urey didn’t account for UV of molecular instability:

Not only would UV radiation destroy any molecules that were made, but their own short lifespans would also greatly limit their numbers. For example, at 100ºC (boiling point of water), the half lives of the nucleic acids Adenine and Guanine are 1 year, uracil is 12 years, and cytozine is 19 days (nucleic acids and other important proteins such as chlorophyll and hemoglobin have never been synthesized in origin-of-life type experiments).

Miller and Urey didn’t account for molecular oxygen:

We all have know ozone in the upper atmosphere protects life from harmful UV radiation. However, ozone is composed of oxygen which is the very gas that Stanley Miller-type experiments avoided, for it prevents the synthesis of organic molecules like the ones obtained from the experiments! Pre-biotic synthesis is in a “damned if you do, damned if you don’t” scenario. The chemistry does not work if there is oxygen because the atmosphere would be non-reducing, but if there is no UV-light-blocking oxygen (i.e. ozone – O3) in the atmosphere, the amino acids would be quickly destroyed by extremely high amounts of UV light (which would have been 100 times stronger than today on the early earth).This radiation could destroy methane within a few tens of years, and atmospheric ammonia within 30,000 years.

And there were three other problems too:

At best the processes would likely create a dilute “thin soup,” destroyed by meteorite impacts every 10 million years. This severely limits the time available to create pre-biotic chemicals and allow for the OOL.

Chemically speaking, life uses only “left-handed” (“L”) amino acids and “right-handed” (“R)” genetic molecules. This is called “chirality,” and any account of the origin of life must somehow explain the origin of chirality. Nearly all chemical reactions produce “racemic” mixtures–mixtures with products that are 50% L and 50% R.

Two more problems are not mentioned in the article. A non-peptide bond anywhere in the chain will ruin the chain. You need around 200 amino acids to make a protein. If any of the bonds is not a peptide bond, the chain will not work in a living system. Additionally, the article does not mention the need for the experimenter to intervene in order to prevent interfering cross-reactions that would prevent the amino acids from forming. That’s another problem with the origin of life – experiments show that getting the building blocks requires an intelligence to intervene.

Now keep in mind that even if you get the building blocks, you are left with the sequencing problem – but that’s another topic for another day.

Walter Bradley: three scientific evidences that point to a designed universe

Dr. Walter L. Bradley
Dr. Walter L. Bradley

Dr. Walter L. Bradley (C.V. here) is the Distinguished Professor of Engineering at Baylor.

Here’s a bio:

Walter Bradley (B.S., Ph.D. University of Texas at Austin) is Distinguished Professor of Engineering at Baylor. He comes to Baylor from Texas A&M University where he helped develop a nationally recognized program in polymeric composite materials. At Texas A&M, he served as director of the Polymer Technology Center for 10 years and as Department Head of Mechanical Engineering, a department of 67 professors that was ranked as high as 12th nationally during his tenure. Bradley has authored over 150 refereed research publications including book chapters, articles in archival journals such as the Journal of Material Science, Journal of Reinforced Plastics and Composites, Mechanics of Time-Dependent Materials, Journal of Composites Technology and Research, Composite Science and Technology, Journal of Metals, Polymer Engineering and Science, and Journal of Materials Science, and refereed conference proceedings.

Dr. Bradley has secured over $5.0 million in research funding from NSF grants (15 yrs.), AFOSR (10 years), NASA grants (10 years), and DOE (3 years). He has also received research grants or contracts from many Fortune 500 companies, including Alcoa, Dow Chemical, DuPont, 3M, Shell, Exxon, Boeing, and Phillips.

He co-authored The Mystery of Life Origin: Reassessing Current Theories and has written 10 book chapters dealing with various faith science issues, a topic on which he speaks widely.

He has received 5 research awards at Texas A&M University and 1 national research award. He has also received two teaching awards. He is an Elected Fellow of the American Society for Materials and the American Scientific Affiliation (ASA), the largest organization of Christians in Science and Technology in the world. He is President elect of the ASA and will serve his term in 2008.

You can read more about his recent research in this article from Science Daily.

Below, I analyze a lecture entitled “Is There Scientific Evidence for an Intelligent Designer?”. Dr. Bradley explains how the progress of science has made the idea of a Creator and Designer of the universe more acceptable than ever before.

The MP3 file is here.

Evidence #1: The design of the universe

1. The correspondence of natural phenomena to mathematical law

  • All observations of physical phenomena in the universe, such as throwing a ball up in the air, are described by a few simple, elegant mathematical equations.

2. The fine-tuning of physical constants and rations between constants in order to provide a life-permitting universe

  • Life has certain minimal requirements; long-term stable source of energy, a large number of different chemical elements, an element that can serve as a hub for joining together other elements into compounds, etc.
  • In order to meet these minimal requirements, the physical constants, (such as the gravitational constant), and the ratios between physical constants, need to be withing a narrow range of values in order to support the minimal requirements for life of any kind.
  • Slight changes to any of the physical constants, or to the rations between the constants, will result in a universe inhospitable to life.
  • The range of possible ranges over 70 orders of magnitude.
  • Although each individual selection of constants and ratios is as unlikely as any other selection, the vast majority of these possibilities do not support the minimal requirements of life of any kind. (In the same way as any hand of 5 cards that is dealt is as likely as any other, but you are overwhelmingly likely NOT to get a royal flush. In our case, a royal flush is a life-permitting universe).

Examples of finely-tuned constants and ratios: (there are more examples in the lecture)

a) The strong force: (the force that binds nucleons (= protons and neutrons) together in nucleus, by means of meson exchange)

  • if the strong force constant were 2% stronger, there would be no stable hydrogen, no long-lived stars, no hydrogen containing compounds. This is because the single proton in hydrogen would want to stick to something else so badly that there would be no hydrogen left!
  • if the strong force constant were 5% weaker, there would be no stable stars, few (if any) elements besides hydrogen. This is because you would NOT be able to build up the nuclei of the heavier elements, which contain more than 1 proton.
  • So, whether you adjust the strong force up or down, you lose stars than can serve as long-term sources of stable energy, or you lose chemical diversity, which is necessary to make beings that can perform the minimal requirements of living beings. (see below)

b) The conversion of beryllium to carbon, and carbon to oxygen

  • Life requires carbon in order to serve as the hub for complex molecules, but it also requires oxygen in order to create water.
  • Carbon is like the hub wheel in a tinker toy set: you can bind other elements together to more complicated molecules (e.g. – “carbon-based life), but the bonds are not so tight that they can’t be broken down again later to make something else.
  • The carbon resonance level is determined by two constants: the strong force and electromagnetic force.
  • If you mess with these forces even slightly, you either lose the carbon or the oxygen.

3. Fine-tuning to allow a habitable planet

  • A number of factors must be fine-tuned in order to have a planet that supports life
  • Initial estimates predicted abundant life in the universe, but revised estimates now predict that life is almost certainly unique in the galaxy, and probably unique in the universe.
  • Even though there are lots of stars in the universe, the odds are against any of them supporting complex life.
  • Here are just a few of the minimal requirements for habitability: must be a single star solar system, in order to support stable planetary orbits, the planet must be the right distance from the sun in order to have liquid water at the surface, the planet must sufficient mass in order to retain an atmosphere, etc.

The best non-theistic response to this argument is to postulate a multiverse, but that is very speculative and there is no experimental evidence that supports it.

Evidence #2: The origin of the universe

1. The progress of science has shown that the entire physical universe came into being out of nothing (= “the big bang”). It also shows that the cause of this creation event is non-physical and non-temporal. The cause is supernatural.

  • Atheism prefers an eternal universe, to get around the problem of a Creator having to create the universe.
  • Discovery #1: Observations of galaxies moving away from one another confirms that the universe expanded from a single point.
  • Discovery #2: Measurements of the cosmic background radiation confirms that the universe exploding into being.
  • Discovery #3: Predictions of elemental abundances prove that the universe is not eternal.
  • Discovery #4:The atheism-friendly steady-state model and oscillating model were both falsified by the evidence.
  • And there were other discoveries as well, mentioned in the lecture.

The best non-theistic response to this argument is to postulate a hyper-universe outside of ours, but that is very speculative and there is no experimental evidence that supports it.

Evidence #3: The origin of life

1. The progress of science has shown that the simplest living organism contains huge amounts of biological information, similar to the Java code I write all day at work. This is a problem for atheists, because the sequence of instructions in a living system has to come together all at once, it cannot have evolved by mutation and selection – because there was no replication in place prior to the formation of that first living system!

  • Living systems must support certain minimum life functions: processing energy, storing information, and replicating.
  • There needs to be a certain amount of complexity in the living system that can perform these minimum functions.
  • But on atheism, the living system needs to be simple enough to form by accident in a pre-biotic soup, and in a reasonable amount of time.
  • The minimal functionality in a living system is a achieved by DNA, RNA and enzymes. DNA and RNA are composed of sequences of proteins, which are in turn composed of sequences of amino acids.

Consider the problems of building a chain of 100 amino acids

  • The amino acids must be left-handed only, but left and right kinds are equally abundant in nature. How do you sort out the right-handed ones?
  • The amino acids must be bound together using peptide bonds. How do you prevent other types of bonds?
  • Each link of the amino acid chain needs to be carefully chosen such that the completed chain with fold up into a protein. How do you choose the correct amino acid for each link from the pool of 20 different kinds found in living systems?
  • In every case, a human or other intelligence could solve these problems by doing what intelligent agents do best: making choices.
  • But who is there to make the choices on atheism?

The best current non-theistic response to this is to speculate that aliens may have seeded the Earth with life at some point in the past.

The problem of the origin of life is not a problem of chemistry, it is a problem of engineering. Every part of car functionality can be understood and described using the laws of physics and chemistry. But an intelligence is still needed in order to assemble the components into a system that has the minimal requirements for a functioning vehicle.

Has MIT physicist Jeremy England solved the origin of life problem?

Casey Luskin assesses a sensational article that was originally published in the radically leftist Salon.

He writes:

In the law there’s a saying, “When the facts are on your side, pound the facts. When the facts aren’t on your side, pound the table.” Some popular science writers have apparently embraced that maxim while declaring that Massachusetts Institute of Technology physicist Jeremy England may have solved the origin of life.

At Salon, Paul Rosenberg recently asserted that England’s work shows “God is on the ropes” and threatens “to undo everything the wacky right holds dear.” Claiming England “has creationists and the Christian right terrified,” Rosenberg must be borrowing rhetorical excesses from Chris Mooney, who likewise wrongly alleged last year in Mother Jones that science “has creationists terrified.”

So what exactly are England’s momentous ideas? Business Insider reviewed his theories last month, explaining they are based upon thermodynamic principles that cause matter to “gradually restructure itself in order to dissipate increasingly more energy.”

The problem of the origin of life is essentially the problem of sequencing amino acids into proteins. Can you sequence amino acids into proteins by shining sunlight on them?

No:

The fundamental problem with England’s theories, and Rosenberg’s polemics, is that sunlight and other forms of energy do not generate new genetic information, nor do they produce new types of biological machines.

It’s one thing to observe that energy keeps a machine running; it’s quite another to claim energy produced the machine in the first place. You could shine light on random Scrabble tiles or disassembled computer components for billions of years, and you’ll never produce a Shakespearean Sonnet or a functional computer. No wonder Harvard biophysicist Eugene Shakhnovich called England’s proposals “extremely speculative, especially as applied to life phenomena.”

[…]Dr. England’s work, interesting though it may be, does not provide that insight. Sunlight—or any known form of energy—does not produce the genetic information life needs to build its complex machinery. In our experience, only one cause generates new language-based information or machine-like structures: intelligence.

Dr. England shouldn’t be faulted if materialists are co-opting his work into an overstated crusade against God and conservative politics. But naturalistic accounts of life’s origins remain as elusive as they have ever been.

Somebody posted this Salon article on my Facebook page and I deleted it because I thought it must be a hoax or something. After all, it was Salon. I mean, not even atheists are stupid enough to think that you can sequence amino acids into protein by shining light on them, are they? Do they think that you can shine sunlight on a keyboard and get a computer program? I didn’t even think this article needed an answer, it’s so ridiculous.

Seriously – when you are talking about creating the first living cell, you are talking about getting a whole bunch of sequences of amino acids right in one shot. It’s an information problem, not a thermodynamics problem. Why would anyone believe that changes in energy levels could explain the creation of information in the first living cell?